Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25430 858 / 0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 837 / 0 ENTH/ANTH/VHS superfamily protein (.1.2) AT1G03050 322 / 3e-101 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 296 / 3e-91 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 168 / 4e-44 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 146 / 3e-37 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 144 / 3e-36 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 143 / 8e-36 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 141 / 4e-35 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 130 / 8e-32 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G255000 [exp] 1023 / 0 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G066900 [exp] 721 / 0 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G128200 [exp] 682 / 0 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G118100 [exp] 329 / 2e-104 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 184 / 4e-50 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 177 / 2e-47 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 149 / 8e-38 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 148 / 1e-37 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 145 / 1e-36 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001502 [exp] 934 / 0 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10002920 [exp] 932 / 0 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10019402 [exp] 414 / 2e-136 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10043260 [exp] 404 / 2e-133 AT4G32285 506 / 2e-173 ENTH/ANTH/VHS superfamily protein (.1.2) Lus10012686 [exp] 316 / 8e-99 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10020824 [exp] 309 / 4e-96 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 185 / 1e-49 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10029998 [exp] 148 / 1e-36 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 144 / 3e-36 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 144 / 3e-36 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF01417 [poplar] [flax] ENTH ENTH domain CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.018G026900.1 pacid=42801768 polypeptide=Potri.018G026900.1.p locus=Potri.018G026900 ID=Potri.018G026900.1.v4.1 annot-version=v4.1 ATGGCGCCGAGCACGATTCGAAAAGCGATTGGGACCGTTAAAGATCAAACAAGCATAGGTATAGCGAAAGTAGCGAGTAACATGGCGCCAGAGCTTGAAG TGGCAATCGTGAAAGCAACGAGCCACGACGATGATCCGCCGAATCAGAAATATATTCACGAGATCTTGAATCTAACTTCGTATTCTCGCGGTTACGTTCA TGCTTGTGTGTCTTTCGTTTCGAAAAGGTTAGGGAAAACGCGGGATTGGATCGTGGCGTTGAAAACATTGATGCTTATTCATAGGTTATTGAACGAAGGA GATCCGTTATTTCAAGAGGAGATTTTGTATGCCACTAGGAAAGGTACTCGGCTGTTGAATATGAGTGATTTTAGAGATGAAGCGCATTCGAGTTCCTGGG ACCATTCGGCTTTTGTTAGGACTTTCGCGATGTATTTGGATCAAAGACTTGAATTGATCTTGTTTGAACGGAAAGGAGGTGATGGTGGCCGTGTCGGTGG GAGTCGTGGTGCGGGGAGTGCTCATGGTGGTGAAATTGAGAGATATTATGGAGGCAGGGGTGGTTTTGGCAGGGAAGATTCGGGTAGAGGTGATTTCAGG TCGCCGCCGCCAAGAGCTTATGAGTATAGTGATCAGTATAATGGGGATTATAATAGGGGGGAGAGTGGGTATGGGATGCCGAGGAGGACGAGGTCGTATG GGGATATGAGTGAGATGGGGGGCGGAGAAGGAAGGGAAGAGAAGAAGACAGCAACGCCGTTGAGGGAAATGAAGCCGGAGAGGATTTTTGGGAAGATGGG ACATTTACAGAGGTTGCTGGATAGATTCTTGTCATGTAGGCCGACGGGGTTGGCCAAGAATAATAGGATGATATTGATTGCGTTGTATCCGGTTGTGAAA GAGAGTTTTCAGTTATACGCGGATATATGTGAGGTTTTGGCTGTTTTGCTCGATAAGTTTTTTGATATGGAGTATCCGGATTGTGTTAAGGCCTTTGATG CTTATGCTAGTGCGGCGAAGCAGATTGACGAGCTGATTGCGTTTTATAATTGGTGTAAGGATACTGGAGTGGCGAGATCGTCCGAGTACCCTGAAGTGCA GAGGATTACAGGCAAGTTGTTGGAGACTTTGGAGGAGTTTGTGAGGGATAGAGCTAAGAGACCTAAGAGTCCGGAGAGGAAAGAGGAGGCACCCCCTGTG CCTCAAGAGGAGGAGCCTGTGCCTGATATGAATGAAATCAAGGCCCTGCCTGCACCGGAGGATTTTACTCCTCCCCCACCTCCGGAGACGGAGCCCAGGC CTCAGAAACCACAGGTTACTGAGGATTTGGTGAATTTGAGGGATGATGCTGTCACGGCTGACGATCAAGGGAATAGGTTGGCTTTGGCTTTGTTTGCTGG TCCAGCAGCCAATAGTGGGAACGGATCATGGGAAGCATTCCAATCTAACGGAGAGCCCCAAGTGACCTCAGCATGGCAGACTCCAGCTGCTGAAGCTGGC AAGGCAGATTGGGAATTGGCATTGGTTGAGACAGCTAGTAATTTATCGAAGCAGAAAGCAACTTTGGGAGGTGGGTTTGATCCATTGTTGTTAAATGGAA TGTATGATCAGGGAATGGTGAGGCAACATGTTGGCACTGCTCAACTGAGTGGAGGTAGTGCTAGTAGCGTGGCGTTACCAGGGCCTGGGAATGGTACAAC ACCTGTTTTAGCTCTGCCAGCTCCAGATGGAACAGTCCAGGCAGTTAATCAGGACCCTTTCGCCGCATCTCTGTGTGTTCCACCTCCCTCATACGTCCAA ATGGCAGATATGGAGAAGAAACAACAATTGCTTGTTCAGGAGCAGGTGACATGGCAGCAATATGCCAGGGATGGGATGCAAGGTCAAACTAGTTTGGCCA AGATCAGCGGTGGTGGTTACTACAATGCAGGTCCTATGCCAACGATGCCTTATGGAATGCCACCTGTCAATGGAATGGGGCCACCACCGGCCGGGTATTA CTACACTCCTTACTGA
AA sequence Show only first row Show all	>Potri.018G026900.1 pacid=42801768 polypeptide=Potri.018G026900.1.p locus=Potri.018G026900 ID=Potri.018G026900.1.v4.1 annot-version=v4.1 MAPSTIRKAIGTVKDQTSIGIAKVASNMAPELEVAIVKATSHDDDPPNQKYIHEILNLTSYSRGYVHACVSFVSKRLGKTRDWIVALKTLMLIHRLLNEG DPLFQEEILYATRKGTRLLNMSDFRDEAHSSSWDHSAFVRTFAMYLDQRLELILFERKGGDGGRVGGSRGAGSAHGGEIERYYGGRGGFGREDSGRGDFR SPPPRAYEYSDQYNGDYNRGESGYGMPRRTRSYGDMSEMGGGEGREEKKTATPLREMKPERIFGKMGHLQRLLDRFLSCRPTGLAKNNRMILIALYPVVK ESFQLYADICEVLAVLLDKFFDMEYPDCVKAFDAYASAAKQIDELIAFYNWCKDTGVARSSEYPEVQRITGKLLETLEEFVRDRAKRPKSPERKEEAPPV PQEEEPVPDMNEIKALPAPEDFTPPPPPETEPRPQKPQVTEDLVNLRDDAVTADDQGNRLALALFAGPAANSGNGSWEAFQSNGEPQVTSAWQTPAAEAG KADWELALVETASNLSKQKATLGGGFDPLLLNGMYDQGMVRQHVGTAQLSGGSASSVALPGPGNGTTPVLALPAPDGTVQAVNQDPFAASLCVPPPSYVQ MADMEKKQQLLVQEQVTWQQYARDGMQGQTSLAKISGGGYYNAGPMPTMPYGMPPVNGMGPPPAGYYYTPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25430			epsin N-terminal homology (ENT...		Potri.018G026900 [exp]	0	1
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Potri.015G141400 [exp]	1.00	0.8003
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Potri.008G198800 [exp]	4.24	0.7106
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	6.16	0.7131
AT2G32910			DCD (Development and Cell Deat...		Potri.013G029200 [exp]	20.78	0.6339
AT3G58110			unknown protein		Potri.019G091700 [exp]	22.00	0.7022
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.010G039900 [exp]	23.36	0.6455	ALA3.3
AT3G58050			unknown protein		Potri.016G060200 [exp]	25.98	0.6749
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.015G083800 [exp]	26.00	0.6264
AT4G22190			unknown protein		Potri.004G003900 [exp]	30.19	0.6004
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	31.63	0.6667

Compare expression of checked genes

Potri.018G026900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.