Plant FIBer expression Database

Potri.018G027001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19720 53 / 2e-08 DRP5B, ARC5 Dynamin related protein 5B, ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G254900
[exp]
81 / 8e-18 AT3G19720 1209 / 0.0 Dynamin related protein 5B, ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G027001.10 pacid=42801038 polypeptide=Potri.018G027001.10.p locus=Potri.018G027001 ID=Potri.018G027001.10.v4.1 annot-version=v4.1
ATGAAATATGATCCTGAATGCGAGGTCCCTTCTTGCTATCTTGTCTCTGATGATGACGCCACTTTTGCCCAGGAGAAATCTCTCCATGAAATTCAGTTCA
TACACTTGATGGCTTCATGGTGGGCGGGTCTCCCTTCTTTACAACTGTTCCTTCTGGAAGAGTTGGTTCTGCCCATGATTCAGTTTATAGCTCCAATGAT
GAATTTAAGCAGAATGCAGGGATGCGCTTTTATGGGGGTGCACTATGTCATCATGCAATGGCAGAATTCTGTTTTGTTGCTGGGGGAATCAACTGTCCTC
AAATTACAGGTGAAGAAATTGCGAATGCATGTGGAGTTGAAGATATCCGTGATGGAACTAACTACTCTAGTCCACCATGGGTCAGCTGCCAATGAGAAGC
ATGGCAATCAACCAAGTGCAGATGTCAAGCTCGGTCATTTGGCTTCAGGCATTGACTCAAGCTCAGCAGTTCAGATAACAGAGACGCACCTTGCAGATCT
TCTAGACTGCACCCCTTGGAAATCGGAGACCTGCCCTATCATCTGA
AA sequence
>Potri.018G027001.10 pacid=42801038 polypeptide=Potri.018G027001.10.p locus=Potri.018G027001 ID=Potri.018G027001.10.v4.1 annot-version=v4.1
MKYDPECEVPSCYLVSDDDATFAQEKSLHEIQFIHLMASWWAGLPSLQLFLLEELVLPMIQFIAPMMNLSRMQGCAFMGVHYVIMQWQNSVLLLGESTVL
KLQVKKLRMHVELKISVMELTTLVHHGSAANEKHGNQPSADVKLGHLASGIDSSSAVQITETHLADLLDCTPWKSETCPII

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G19720 DRP5B, ARC5 Dynamin related protein 5B, AC... Potri.018G027001
[exp]
0 1
AT5G60600 HDS, ISPG, CSB3... CONSTITUTIVE SUBTILISIN 3, CHL... Potri.004G210400
[exp]
3.00 0.8851
AT5G02390 DAU1 DUO1-activated unknown 1, Prot... Potri.016G095500
[exp]
3.31 0.9386
AT5G40270 HD domain-containing metal-dep... Potri.009G147750
[exp]
4.24 0.8903
AT3G59360 UTR6, ATUTR6 UDP-galactose transporter 6 (.... Potri.008G077300
[exp]
5.65 0.8491
AT1G21280 unknown protein Potri.004G127101
[exp]
6.78 0.8959
AT4G10150 RING/U-box superfamily protein... Potri.013G095100
[exp]
6.92 0.8585
AT1G21860 SKS7 SKU5 similar 7 (.1) Potri.010G229500
[exp]
9.38 0.8604
AT3G24740 Protein of unknown function (D... Potri.002G216600
[exp]
10.39 0.8624
AT1G80280 alpha/beta-Hydrolases superfam... Potri.001G174900
[exp]
12.24 0.8580
AT5G66360 DIM1B adenosine dimethyl transferase... Potri.006G264101
[exp]
13.63 0.8492

Potri.018G027001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.