Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11760 326 / 8e-103 unknown protein AT5G04860 299 / 8e-92 unknown protein AT2G25460 237 / 6e-72 unknown protein AT2G10560 185 / 4e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G015700 [exp] 310 / 2e-96 AT3G11760 665 / 0.0 unknown protein Potri.006G201200 [exp] 306 / 2e-94 AT3G11760 818 / 0.0 unknown protein Potri.010G244100 [exp] 303 / 9e-94 AT3G11760 657 / 0.0 unknown protein Potri.016G067600 [exp] 303 / 5e-93 AT3G11760 803 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029364 [exp] 323 / 8e-102 AT3G11760 733 / 0.0 unknown protein Lus10016183 [exp] 322 / 2e-101 AT3G11760 771 / 0.0 unknown protein Lus10021254 [exp] 308 / 2e-95 AT3G11760 793 / 0.0 unknown protein Lus10013598 [exp] 302 / 4e-93 AT3G11760 759 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10358 [poplar] [flax] NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence Show only first row Show all	>Potri.018G027200.1 pacid=42802098 polypeptide=Potri.018G027200.1.p locus=Potri.018G027200 ID=Potri.018G027200.1.v4.1 annot-version=v4.1 ATGAAGTGGTCATGGATTCAGGCAGCTGGGACAACCAAGAAGGTTCATGTCAAGGTGAGGCCATTGAAGCTAGAAGGATTGTTGTGTAAAGAAAAGGTTG ATGGTAATGGAAGAGAGAGAATGGTTTTTGTTGTCAAGATGAAATGGAAAGGTCCCAAGTCGTCAGGATTAGTTCCATTTTATCGAGTTTCCAAGTGCCA AAGAAATTATAGCAGCCAGAAATTCCTCAAGGAAGGGGAGTCTGATATAGAATGGAATGGTGAAGAATTTGAGAGTGTTTGGATTCCTTCTAAAGACAAT TCTTTTGTTCAGTGGGATGTTTCTTTCAGCGTTTTATATGGTGAGGATGAGAAATCCATGGCTAAAATGGCAGTCTTGGGAAATGTTACGCTGAATATAG CAGAACTGGCTTCAAGGATGAATTCCCAGATTGAAAAAAAGCTGCCAATTTCTTTACATATTGATGGAGTTGACTGCCAAGCTTCTCTTTTGATTGGTGT AAGCTTCGCTGAGGTCAGAAATTCATGTGACCAAGCAGGAACTGTTCAAAACTCGGGTGATTCAGATACTAAGGAGGGACTTTTCAAGGGCAGTACAGCT TCTAAGAATGAAATGGACAGAGTAAACCGAGTGAATTCTAGTGACTCGGATGAGTCAACTATGTTTGACTCAGATGATTCGGCCGGAACTTTGACTTCCA CGAGCGACGGTAGTACTCAAGAGATGGGTTCAGGGATCGAGTTCGGTTCATCCCTGGAGACTCAGTCAGACCGAGCTACCAAGGTTGGGTTATTCTCATG GAAGAAGAGAAGGTTGAGCTTCAGCTTGTCCAGGAGGAAAGTTGAGCCATTCGTTGAAAAAACTGATGCGAAGGTGGACAAATCCGATTCCACACAGAAA GACAAGTGGGAAGTCAAAGAACTAGTCAGCAGAGATGGTCAAGCAAAACTCGAAGCCAACGTGTTTCTTGCTTCCTTTGATCAACGAAGTGAAAAGGCCG CCGGAGAGAGTGCCTGCACGGCAATAGTTGCGGTCATTGCCGATTGGCTTCACTCAAACCGAGAATTCATGCCAACATTGTCTCAGTTTGACAACCTCAT AACAGAAGGTTCACAGGAATGGCGAAAGCTTTGCGACAATGAGGCCTACATGAATTCCTTCCCTGATAACCACTTTGATCTTGAAACTGTCTTGAAAGCT GATCTTCGGCCTTTGACCATCTCACACGAGAAATCTTTTACTGGGATTTTCAGTCCTCAAAAATTTGAAAACTTAAAGGGAGCCACATCTTTCGACGACA TATGGCAAGAAATAACCAGCAACACAAACGATTATGAGCAGAGGATATATATTGTGAGTTGGAACGATCATTTCTTCGTGTTGAAGGTAGATGCCGAAGC TTATTATATCATTGATTCGCTAGGTGAGAGACTCTCTGAGGGTTGCGGCCAGGCATACATCTTAAAGTTCGATGACTCGAGCTTGATGTATGAGAAGGTG GCGAAAGAAGATGTTGTCACGGAGGAAATGGCAGGGGAAGAGAGGTCCAAGGATAAAGAGGACATAATTTGCAAGGGAAAAGAGTGTTGTAAAGAATTCA TTAAGAGATTCCTTGCTGCCATTCCAGTTGGAGAACTTGAAGAGGAAGAGAAAAGGGGCGCAGTTTCCACCTTTTCTCTCCTGAAGAGACTACAGATAGA TTTCCACTACTGCTCTTCTTTGTATGCTTCAAATTCCTCCTCCTCTCCAACATCTTCCACCTTCTTCTAG
AA sequence Show only first row Show all	>Potri.018G027200.1 pacid=42802098 polypeptide=Potri.018G027200.1.p locus=Potri.018G027200 ID=Potri.018G027200.1.v4.1 annot-version=v4.1 MKWSWIQAAGTTKKVHVKVRPLKLEGLLCKEKVDGNGRERMVFVVKMKWKGPKSSGLVPFYRVSKCQRNYSSQKFLKEGESDIEWNGEEFESVWIPSKDN SFVQWDVSFSVLYGEDEKSMAKMAVLGNVTLNIAELASRMNSQIEKKLPISLHIDGVDCQASLLIGVSFAEVRNSCDQAGTVQNSGDSDTKEGLFKGSTA SKNEMDRVNRVNSSDSDESTMFDSDDSAGTLTSTSDGSTQEMGSGIEFGSSLETQSDRATKVGLFSWKKRRLSFSLSRRKVEPFVEKTDAKVDKSDSTQK DKWEVKELVSRDGQAKLEANVFLASFDQRSEKAAGESACTAIVAVIADWLHSNREFMPTLSQFDNLITEGSQEWRKLCDNEAYMNSFPDNHFDLETVLKA DLRPLTISHEKSFTGIFSPQKFENLKGATSFDDIWQEITSNTNDYEQRIYIVSWNDHFFVLKVDAEAYYIIDSLGERLSEGCGQAYILKFDDSSLMYEKV AKEDVVTEEMAGEERSKDKEDIICKGKECCKEFIKRFLAAIPVGELEEEEKRGAVSTFSLLKRLQIDFHYCSSLYASNSSSSPTSSTFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11760			unknown protein		Potri.018G027200 [exp]	0	1
AT1G28760			Uncharacterized conserved prot...		Potri.013G064800 [exp]	2.00	0.8395
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	2.00	0.8495
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220700 [exp]	2.64	0.8727
AT2G20562			unknown protein		Potri.011G114600 [exp]	2.82	0.8049
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G121200 [exp]	3.00	0.8013	DREB64
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G110500 [exp]	3.46	0.7904	DREB65
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.005G070900 [exp]	3.46	0.8418
AT5G45290			RING/U-box superfamily protein...		Potri.014G053500 [exp]	3.74	0.8166
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	3.87	0.8356
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	4.89	0.8180	Pt-ACA1.1

Compare expression of checked genes

Potri.018G027200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.