Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 1012 / 0 SD2-5 S-domain-2 5 (.1) AT5G35370 421 / 1e-134 S-locus lectin protein kinase family protein (.1) AT1G34300 389 / 1e-122 lectin protein kinase family protein (.1) AT5G24080 348 / 2e-111 Protein kinase superfamily protein (.1) AT2G19130 343 / 1e-105 S-locus lectin protein kinase family protein (.1) AT4G00340 315 / 4e-95 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 289 / 4e-89 Protein kinase superfamily protein (.1) AT1G11330 273 / 2e-79 S-locus lectin protein kinase family protein (.1.2) AT5G60900 263 / 3e-76 RLK1 receptor-like protein kinase 1 (.1) AT3G17420 255 / 3e-76 GPK1 glyoxysomal protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254600 [exp] 1402 / 0 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.019G013797 [exp] 456 / 5e-148 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.002G086500 [exp] 446 / 4e-144 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.015G026300 [exp] 409 / 4e-130 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G086200 [exp] 381 / 1e-119 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.004G061900 [exp] 381 / 2e-118 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.019G086400 [exp] 375 / 2e-117 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 374 / 3e-117 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 374 / 9e-117 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002917 [exp] 1032 / 0 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 1028 / 0 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 805 / 0 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10028067 [exp] 419 / 4e-134 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039315 [exp] 419 / 2e-133 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 375 / 2e-117 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10042266 [exp] 348 / 8e-108 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 335 / 2e-102 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 330 / 4e-101 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028711 [exp] 322 / 5e-100 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.018G027300.3 pacid=42801843 polypeptide=Potri.018G027300.3.p locus=Potri.018G027300 ID=Potri.018G027300.3.v4.1 annot-version=v4.1 ATGGACCAATGGGGTTTAGTTCGCTTCATGGGGTCCATTTCAGTGTTTGTCCTCCTTTTTCCTGGAGGTTGCAAGGCTGGTATCCAAAGTGTGGGCAAGA TCTATCCAGGGTTACAAGGGTCTGCAATGACTTGGATCAATCTTGATGGGTTGTTTCTTAGATCTAACAACTCGGATTTCGCGTTTGGCTTCACAACTAC TGAAGATGTTACACAATTTCTGTTAACCATTGTCCACTTGGGTAGCTCGAAGGTCATATGGTCTGCAAATAGAGGCTCTCCAGTTTCAAATTCTGATAAA TTTATCTTTGGTGAAGATGGTAAGGTATCTTTGCAGAAAGGGGAAGATGTGGTTTGGGCAGCTGATACTGGTGGCAAGAGGGTTTCTGCAATAGAGATGC AGGATTCAGGAAATTTGGTTTTGCTTGGGAATGACACTAGTGTACTGTGGCAGAGTTTTAGCCATCCTACCAATACACTCATATCAAACCAGGATTTTGT AGATGGAATGAAACTTGTAAGCGATCCCAACTCCAATAATCTGACCCATATCCTTGAAATCAAGTCCGGAGACATGATTCTTTCAGCAGGTTTCCAAACT CCACAGCCTTACTGGTCTGTCCAAAAGGAGAGCCGGATAACCATCAATCAAGGTGGTGGAAAAGTTGCCGTGGCATCTCTCAGAGGAAATTCATGGAGGT TCTATGATGGAAACAAAGTGTTCCTGTCACAATTTATTTTCTCAGATAGTGTTGATGCAAGTGCCACTTGGATTGCAGTTCTAGGAAACGATGGTTTTAT ATCTTTCTACAATCTTGATGAAAGTGGCGGTGCTTCACAAACAAAAATACCAAGTGATCCATGCAGCAGACCAGAACCTTGCGATGCACATTTTGTTTGT TCTGGTAACAATGTATGCCAGTGCCCTTCAGGTCTTAGTACCCGCTCAAATTGCCAGACAGGTATTGTCTCTACCTGTGATGGTTCACATGATTCTACAG AGCTTGTAAGTGCTGGGAATGGGCTCACTTATTTTTCTCTGGGGTTTCTCCCACCCTCTTCAAAAACCAATATGGAAGGTTGCAAATCCGCTTGCCAGAG TAACTGCTCATGCCTTGCTTTTTTCTTCCAAAACAGTTCTGGGAACTGCTTCCTGTTCAGTGACATCGGAAGTTTCCAGAACTCTAAGGCAGGCCCTAGT TTTGTTGCATACATTAAAGTTTTGAGCGATGGAGGCAGTGGTTCCAACGCTGGAGGGGATGGAAGCAGCAAAAAAAGCTTTCCAATTGTTGTGATAATAG TCATTGCCACATTGATTACCATTTGTGGTCTACTTTATCTGGCATTTCGTTATCACAGGAGAAAGAAGAAAATGCCGGAGTCTCCCCGCGAAACCTCAGA AGAGGATAACTTCTTAGAGACTTTATCTGGGATGCCGATCCGGTTTGGTTACAGAGATCTTCAGACTGCAACTAATAATTTCTCAGTGAAGCTTGGACAA GGAGGATTTGGCTCAGTTTATCAAGGAGCTCTCCCAGATGGAACCCGACTGGCTGTGAAGAAGTTGGAAGGCATTGGTCAGGGAAAGAAAGAGTTTCGAG CTGAAGTTAGCATCATTGGTAGTATCCATCATCACCACTTGGTTAGGCTGAAAGGCTTTTGTGCTGAAGGAACTCATCGCCTCCTTGCTTATGAGTTCAT GGCAAATGGCTCTTTGGATAAATGGATCTTCAAGAGAAACAATGAAGAGTTCCTGTTGGATTGGGAAGCAAGATTCAATATTGCTGTGGGAACAGCAAAG GGACTAGCTTACCTCCACGAAGACTGTGATGTAAAGATCATTCATTGTGACATAAAACCGGAGAACGTGCTTCTTGATGGTCAGTTTCTTGCCAAAGTCT CAGATTTTGGCTTGGCTAAGTTAATGAATCGAGAGCAAAGCCATGTTTTCACAACACTAAGAGGCACCAGAGGGTACCTTGCACCAGAATGGATCACAAA TTATGCCATATCAGAGAAAAGTGATGTTTATAGCTATGGCATGCTGTTGCTTGAGATCATCGGTGGAAGAAAAAACTTTATTGCAACTGAATCTTCAGAG AAGTCCCATTTCCCTTCTTATGCATTCAAGATGATGGAAGAAGGGAAACTGAGGGAAATCCTTGATTCGAAGCTGAGGTTCGACAAGGACGATGAGAGGG TCTCCACGTCTATTAAAGTTGCGTTATGGTGTATACAGGAAGATATGCATCTCAGGCCATCAATGACCAAAGTTGTCCAAATGCTTGAAGGTCTCTCCCC AGTTCCACTGCCACCTACTTCATCACCATTGGGCCCTCGCCTTTATTCAAGTTTCTTCAAATCTATAAGTGGGGAAGGCACTTCCTCAGGACCATCAGAC AGCAATAGTGATGCCTACCTCTCTGCAGTCCAGCTTTCTGGCCCAAGATAA
AA sequence Show only first row Show all	>Potri.018G027300.3 pacid=42801843 polypeptide=Potri.018G027300.3.p locus=Potri.018G027300 ID=Potri.018G027300.3.v4.1 annot-version=v4.1 MDQWGLVRFMGSISVFVLLFPGGCKAGIQSVGKIYPGLQGSAMTWINLDGLFLRSNNSDFAFGFTTTEDVTQFLLTIVHLGSSKVIWSANRGSPVSNSDK FIFGEDGKVSLQKGEDVVWAADTGGKRVSAIEMQDSGNLVLLGNDTSVLWQSFSHPTNTLISNQDFVDGMKLVSDPNSNNLTHILEIKSGDMILSAGFQT PQPYWSVQKESRITINQGGGKVAVASLRGNSWRFYDGNKVFLSQFIFSDSVDASATWIAVLGNDGFISFYNLDESGGASQTKIPSDPCSRPEPCDAHFVC SGNNVCQCPSGLSTRSNCQTGIVSTCDGSHDSTELVSAGNGLTYFSLGFLPPSSKTNMEGCKSACQSNCSCLAFFFQNSSGNCFLFSDIGSFQNSKAGPS FVAYIKVLSDGGSGSNAGGDGSSKKSFPIVVIIVIATLITICGLLYLAFRYHRRKKKMPESPRETSEEDNFLETLSGMPIRFGYRDLQTATNNFSVKLGQ GGFGSVYQGALPDGTRLAVKKLEGIGQGKKEFRAEVSIIGSIHHHHLVRLKGFCAEGTHRLLAYEFMANGSLDKWIFKRNNEEFLLDWEARFNIAVGTAK GLAYLHEDCDVKIIHCDIKPENVLLDGQFLAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMLLLEIIGGRKNFIATESSE KSHFPSYAFKMMEEGKLREILDSKLRFDKDDERVSTSIKVALWCIQEDMHLRPSMTKVVQMLEGLSPVPLPPTSSPLGPRLYSSFFKSISGEGTSSGPSD SNSDAYLSAVQLSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.018G027300 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.014G144600 [exp]	2.00	0.8662
AT5G06850			C2 calcium/lipid-binding plant...		Potri.006G058700 [exp]	3.00	0.8496
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.007G135400 [exp]	4.00	0.8399
AT1G27320		AHK3	histidine kinase 3 (.1)		Potri.001G057400 [exp]	4.47	0.8275	PHK3,AHK3.1
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143820 [exp]	4.69	0.8671
AT1G27170			transmembrane receptors;ATP bi...		Potri.017G143566 [exp]	19.62	0.8262
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Potri.019G069000 [exp]	22.20	0.8034
AT5G08240			unknown protein		Potri.005G092400 [exp]	22.84	0.8272
AT5G14220		HEMG2, MEE61, P...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G333500 [exp]	23.91	0.7991
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127400 [exp]	24.00	0.7876

Compare expression of checked genes

Potri.018G027300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.