Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 232 / 5e-72 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G35880 152 / 2e-41 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G23090 112 / 1e-27 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT5G28646 102 / 2e-25 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G70950 101 / 4e-23 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G04630 98 / 9e-23 WDL1 WVD2-like 1 (.1.2.3) AT1G54460 92 / 3e-20 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01710 43 / 0.0003 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G01015 42 / 0.0007 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254400 [exp] 650 / 0 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.016G066600 [exp] 155 / 3e-42 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G200400 [exp] 153 / 3e-41 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G162800 [exp] 129 / 4e-33 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 125 / 1e-31 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.005G055900 [exp] 115 / 3e-28 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.013G042800 [exp] 109 / 2e-26 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 103 / 2e-23 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 99 / 8e-22 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002915 [exp] 286 / 8e-93 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10029355 [exp] 149 / 8e-40 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10016193 [exp] 148 / 2e-39 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002012 [exp] 135 / 7e-36 AT4G32330 141 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10021223 [exp] 119 / 1e-29 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 117 / 6e-29 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10005533 [exp] 110 / 6e-27 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 110 / 7e-27 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10042543 [exp] 106 / 1e-25 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 106 / 2e-25 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.018G027500.1 pacid=42800559 polypeptide=Potri.018G027500.1.p locus=Potri.018G027500 ID=Potri.018G027500.1.v4.1 annot-version=v4.1 ATGGATTCTGATTATCATCTTTTCCCTGATGATGGGCTTGAGACTGTCCATCAAAATGGTGTTCATGAGCAAAGTGCTGCTGCTAGAGAGGATGGTGTTG TTTCGAATAATTTAAGTGGGAGCATGGGAAACACTTTTGAGGTTGATGATTGTACTAACGATAATCTGTCCACCAGGGAAGTCGAGGGTGAATTAAAGGT ATATGTGGGAATCAATGGATTTTCTGTTTCTAAGGAAGGAGAAGCCAAAGTGAAAGATGCTGATAATTCAGAGAAAGCTAGATCACAGAAGGGTTCAGGA AAGGGTGGTAATGCAAAGCCCTCAAACCCAAAAAATGTGTCAGCCACTCAGGTGAAGGGTAAGGATGGAAGAGATGCTGTGGCTCGAACTGCTGTTTCAA ATGGCTCTGTTGCTGTAAATTCACAATTGAAACAGTCTTTGAAAAGTAACTCATTCAACGAGAGGCAGGGTCAGGCATCCAAGCAATCTGGGAAGTCTGA TGCAGTGCTGTCTGCTGGCCTTGTGGAGAAGGCGAAACCTTTGAAGAAAGGGCCTGTTGTGAAAGCTGAAGGAGAAACAGAATCTACTTCAAGTCCCACT GCAGAAGATGCCAAATCTCGCAAGTTTGGTACACTTCCGAATTATGGTTTCAGCTTTAAGTGTGATGAACGAGCTGAGAAAAGAAAGGAGTTCTACACTA AGCTTGAGGAAAAGATTCATGCAAAGGAAGTGGAAAAGAGTACCTTGCAAGCTAAGTCCAAGGAAACCCAAGAAGCTGAGATTAAGTTGTTTAGGAAAAG TCTGGCTTTTAAAGCAACCCCTATGCCCAGCTTTTATCAGGAGCCTGCACCACTGAAGGTGGAGCTAAAGAAGATACCCACAACAAGAGCGAAATCTCCC AAGCTAGGTAGAAAGAAGAGCCCATCCCCCGCGGACTCTGAAGGAAATAATAGCCAGAGCAATCGATCAGGTCGTCTAAGTTTGGATGAGAAAATATCTT CTAAGATTCCTATCAGAGGACTTTCTCCTGCCCATCCAAAGAAACCGCAGAGGAAATCCCTCCCCAAACTGCCTTCTGAAAAGATCAACTTATATGCAAA TGATGAAAAAGGCAAATTGCCTAAAGCATCAAATGAGGAAAATACCACATTATCTGATCAAACAAATGAAGGTGTATCTGCTAACCAAGAGCAGGAAGCT GTTTCGAAGAACGAGGCAAGTGAATTTCTGCCCCCAAAAGAGGAGGTGGTGGTTCAAGAGGAAGCTGCCACGTTGATGAAAGGTCCCATAGCTTTGGCAG TTTGA
AA sequence Show only first row Show all	>Potri.018G027500.1 pacid=42800559 polypeptide=Potri.018G027500.1.p locus=Potri.018G027500 ID=Potri.018G027500.1.v4.1 annot-version=v4.1 MDSDYHLFPDDGLETVHQNGVHEQSAAAREDGVVSNNLSGSMGNTFEVDDCTNDNLSTREVEGELKVYVGINGFSVSKEGEAKVKDADNSEKARSQKGSG KGGNAKPSNPKNVSATQVKGKDGRDAVARTAVSNGSVAVNSQLKQSLKSNSFNERQGQASKQSGKSDAVLSAGLVEKAKPLKKGPVVKAEGETESTSSPT AEDAKSRKFGTLPNYGFSFKCDERAEKRKEFYTKLEEKIHAKEVEKSTLQAKSKETQEAEIKLFRKSLAFKATPMPSFYQEPAPLKVELKKIPTTRAKSP KLGRKKSPSPADSEGNNSQSNRSGRLSLDEKISSKIPIRGLSPAHPKKPQRKSLPKLPSEKINLYANDEKGKLPKASNEENTTLSDQTNEGVSANQEQEA VSKNEASEFLPPKEEVVVQEEAATLMKGPIALAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32330			TPX2 (targeting protein for Xk...		Potri.018G027500 [exp]	0	1
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.001G267300 [exp]	2.82	0.8754
AT3G24030			hydroxyethylthiazole kinase fa...		Potri.001G053900 [exp]	3.00	0.8730
AT2G35680			Phosphotyrosine protein phosph...		Potri.014G045500 [exp]	5.47	0.8555
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Potri.001G246300 [exp]	5.74	0.8095
AT3G22750			Protein kinase superfamily pro...		Potri.002G049700 [exp]	7.21	0.8454
AT1G07850			Protein of unknown function (D...		Potri.009G026300 [exp]	7.74	0.8172
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	9.59	0.8663
AT1G47200		WPP2	WPP domain protein 2 (.1)		Potri.014G021900 [exp]	10.58	0.8539	MAF1.2
AT5G25360			unknown protein		Potri.018G130900 [exp]	10.72	0.8237
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.012G043900 [exp]	13.67	0.8368	NCPGS.6

Compare expression of checked genes

Potri.018G027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.