Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25490 820 / 0 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 730 / 0 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 172 / 1e-45 F-box/RNI-like superfamily protein (.1) AT5G27920 126 / 3e-30 F-box family protein (.1) AT5G23340 120 / 3e-29 RNI-like superfamily protein (.1) AT5G01720 103 / 6e-23 RNI-like superfamily protein (.1) AT1G47056 96 / 2e-20 VFB1 VIER F-box proteine 1 (.1) AT3G58530 84 / 2e-17 RNI-like superfamily protein (.1) AT1G77000 82 / 2e-16 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G67250 82 / 3e-16 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254100 [exp] 1171 / 0 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 835 / 0 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 827 / 0 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G105400 [exp] 135 / 4e-33 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 134 / 1e-32 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 128 / 6e-31 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.019G123400 [exp] 125 / 9e-30 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 115 / 1e-26 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 100 / 2e-22 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002014 [exp] 874 / 0 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 865 / 0 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 765 / 0 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 744 / 0 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012764 [exp] 166 / 1e-42 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10001264 [exp] 135 / 4e-33 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 131 / 2e-31 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10034013 [exp] 130 / 6e-31 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10040998 [exp] 114 / 5e-27 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 113 / 1e-26 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0022 [poplar] [flax] LRR PF13516 [poplar] [flax] LRR_6 Leucine Rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G027700.1 pacid=42801416 polypeptide=Potri.018G027700.1.p locus=Potri.018G027700 ID=Potri.018G027700.1.v4.1 annot-version=v4.1 ATGTCTAAGGTCTTTGAATTTGCTGGTGAAAATGATTTTTGTCCTGGGGGGCCAATATACACTAACCCCAAGGAGCCGAGCCTCTTCTTGTCCCTTGGTC TTCCTGTGGACGTGTACTTTCCTTCACGCAAGAGGTCTCGCATCAGTGCTCCATTTGTCTTTTCTGAGGAGAGATTTGAGCAGAAAAAGCAAGCTTCTAT TGAAGTTTTGCCAGATGAATGCCTCTTCGAAATCTTCAGACGTTTGCCCGGGGGTGAAGAGAGAAGTGCCTGTGCCTGTGTTTCAAAGCGTTGGCTTATT CTTCTAAGCAGCATATGCAGGGATGAACTTTGCAGCCAGAATAGATCAGCTGTAAAGAACACTGAGGTGAAAAGCAAGATTGAGGATGAGGAAATTGAAG GTGATGGATGCTTGTCCAGGAGCTTGGAGGGGAAAAAGGCCACAGATATTAGACTTGCTGCTATTGCTGTTGGAACTGCTAATTGTGGAGGATTGGGCAA GCTTTTTATCCGTGGAAGCAATTCTAGTCAAGGAGTGACAAAGGTTGGCCTCAGAGCAATTGCCCGTGGATGCCCTTCTCTGAAGGTTCTTTCCCTGTGG AATTTGCCTTCTGTCGGGGATGAAGGTTTATCAGAGATTTCCAATGGCTGTCACATGCTGGAGAAGCTAGATCTTTCCCAATGCCCCGCAATTACTGACA AGGGTTTGCTTGCAATTGCAAAAAACTGCATCAATCTGACCGATCTAGTGTTAGAATCTTGCTCAAACATTGGCAATGAAGGTCTGCAGGCTGTTGGCAA GCATTGCACCAATCTAAAGTCCATTTCAATCACAAACTGCCCAGGTGTTGGGGATCAGGGAATTGCAGCCCTCGTATCTTCTGCCTCAAATGTTTTGACA AAGCTGAAGCTCCAATCACTGAACATTACTGACGTGTCCCTGGCTGTTGTTGGACACTATGGCAAGGCAGTTACCGATCTTGTTCTGACAAGCCTCCCAA ATGTCAGTGAGAGGGGCTTCTGGGTCATGGGTAATGGCCAAGGGTTGCATAAGTTGAAGTCCTTGACAGTTACATCCTGTCTGGGAGTGACAGATATTGG ACTTGAAGCTGTGGGAAAGGGTTGCCCAAATTTGAAACAGTTCTGCCTCCACAAATGTGCTTTCTTATCTGACAATGGACTAGTCTCATTTGCAAAAGCA GCAGAGACACTGGAGAGCCTGCAATTAGAGGAGTGCCACAGGATCACCCAGTTTGGGTTTTTTGGTTCCCTTTTGAACTGTGGTGCAAATCTGAAGGCTA TTTCTTTGGTGAACTGCTTCGGGATTAGGGACTTAAAGCTGGATTTGCCTGAGCTGTCTCCTTGCAATTCCCTACGATCATTGTCTATCCGCAACTGCCC TGGTTTTGGTGATGGTAGCCTGGCGTTGTTGGGTAACTTGTGCCCACAACTGCGGAATGTGGAATTGAGCGGGCTTCAGGGAGTTACTGATGCTGGGTTT CTCTCAGTACTTGAGAACTGTGAGGCTGGTCTGGTGAAGGTTAACCTTAGTGGGTGTATCAATTTGTCTGACAAAGTGGTGTCGGTGATGACTGAGCAGC ATGGTTGGACTCTTGAGATGTTGAATCTTGATGGATGTAGGAGGATAACTGATGCAAGTTTGGTGGCAATAGCAGAGAATTGCTTCTTGCTATATGACCT TGATGTCTCTAAGTGTGCAACCACCGATTCTGGGATTGCAGCCATGGCACGCTCAAAACAGCTCTGTCTGCAAGTCCTTTCTGTGTCAGGTTGCTCTATG ATATCAGACAAGAGCTTACCTGCCCTTGTAAAATTGGGTCAGACCCTCTTGGGTTTGAATCTCCAGCACTGCAATGCTATCAGCAGCAGCACTGTTGATA TACTTGTGGAGAGGTTATGGAGGTGTGATATTCTTTTGTAA
AA sequence Show only first row Show all	>Potri.018G027700.1 pacid=42801416 polypeptide=Potri.018G027700.1.p locus=Potri.018G027700 ID=Potri.018G027700.1.v4.1 annot-version=v4.1 MSKVFEFAGENDFCPGGPIYTNPKEPSLFLSLGLPVDVYFPSRKRSRISAPFVFSEERFEQKKQASIEVLPDECLFEIFRRLPGGEERSACACVSKRWLI LLSSICRDELCSQNRSAVKNTEVKSKIEDEEIEGDGCLSRSLEGKKATDIRLAAIAVGTANCGGLGKLFIRGSNSSQGVTKVGLRAIARGCPSLKVLSLW NLPSVGDEGLSEISNGCHMLEKLDLSQCPAITDKGLLAIAKNCINLTDLVLESCSNIGNEGLQAVGKHCTNLKSISITNCPGVGDQGIAALVSSASNVLT KLKLQSLNITDVSLAVVGHYGKAVTDLVLTSLPNVSERGFWVMGNGQGLHKLKSLTVTSCLGVTDIGLEAVGKGCPNLKQFCLHKCAFLSDNGLVSFAKA AETLESLQLEECHRITQFGFFGSLLNCGANLKAISLVNCFGIRDLKLDLPELSPCNSLRSLSIRNCPGFGDGSLALLGNLCPQLRNVELSGLQGVTDAGF LSVLENCEAGLVKVNLSGCINLSDKVVSVMTEQHGWTLEMLNLDGCRRITDASLVAIAENCFLLYDLDVSKCATTDSGIAAMARSKQLCLQVLSVSGCSM ISDKSLPALVKLGQTLLGLNLQHCNAISSSTVDILVERLWRCDILL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.018G027700 [exp]	0	1
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	1.41	0.8474
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.006G254100 [exp]	1.73	0.7989	EBF1.2,EBF3
AT5G14940			Major facilitator superfamily ...		Potri.017G152800 [exp]	3.16	0.8107
AT5G24870			RING/U-box superfamily protein...		Potri.018G005600 [exp]	4.00	0.7892
AT1G54200			unknown protein		Potri.003G063400 [exp]	6.32	0.7833
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.006G132000 [exp]	7.74	0.7570
AT2G38550			Transmembrane proteins 14C (.1...		Potri.006G108700 [exp]	10.58	0.7623
AT1G58025			DNA-binding bromodomain-contai...		Potri.004G223700 [exp]	12.32	0.7439
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	13.49	0.7640
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.005G170500 [exp]	14.69	0.7565	Pt-TGA3.2

Compare expression of checked genes

Potri.018G027700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.