Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25360 182 / 1e-58 unknown protein AT4G32342 149 / 1e-45 unknown protein AT3G15770 140 / 1e-42 unknown protein AT1G15350 130 / 2e-38 unknown protein AT3G54880 91 / 2e-23 unknown protein AT5G03440 89 / 3e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254000 [exp] 250 / 1e-85 AT5G25360 197 / 3e-65 unknown protein Potri.001G192700 [exp] 169 / 1e-53 AT5G25360 169 / 1e-54 unknown protein Potri.006G068600 [exp] 155 / 3e-48 AT5G25360 194 / 9e-64 unknown protein Potri.018G130900 [exp] 149 / 1e-45 AT5G25360 140 / 8e-43 unknown protein Potri.008G034600 [exp] 100 / 2e-27 AT3G54880 120 / 8e-37 unknown protein Potri.010G227800 [exp] 98 / 2e-26 AT3G54880 123 / 7e-38 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002164 [exp] 156 / 2e-48 AT5G25360 174 / 3e-56 unknown protein Lus10005466 [exp] 111 / 7e-32 AT5G25360 99 / 6e-28 unknown protein Lus10013824 [exp] 99 / 1e-26 AT3G54880 108 / 1e-31 unknown protein Lus10026537 [exp] 86 / 3e-22 AT5G03440 97 / 5e-28 unknown protein Lus10030101 [exp] 79 / 2e-19 AT5G25360 79 / 2e-20 unknown protein Lus10038690 [exp] 63 / 2e-12 AT3G54880 81 / 1e-20 unknown protein Lus10037957 [exp] 57 / 1e-10 AT3G54880 73 / 1e-17 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13259 [poplar] [flax] DUF4050 Protein of unknown function (DUF4050)
Representative CDS sequence Show only first row Show all	>Potri.018G027800.1 pacid=42801585 polypeptide=Potri.018G027800.1.p locus=Potri.018G027800 ID=Potri.018G027800.1.v4.1 annot-version=v4.1 ATGTATTCTAGGTGTTCTTTCTTGACTCAAACTGGGAGAAGCTTTGGGAACAAACCTTTTTGTTCATTTGCAGTGTTTTCCGGGACTTATTTTCGTGCTC TTTTGCTTTTGGGGATGGAATCTTTTAAGAGAAAATGCAAGGCTGTTTTCAGTAGCAGAGGTTGTTTTGGATGCTGTGCTAAACCCCCTACAATTATTGC GATAGATGCGTCATCAAAGGGACTGAGAGTTCAAAAACGATCAGTAAAAAAGTCAAGCAAATCGAACAATTTTTGGAGCACTAGTGCTGGTGATATGGAG AATAGTACAATGCATTCCCAAGGAAGCCTTTCATCAATTAGCACATTAAACCAGCAGCTTGATCCCAGTAATGCTGGAAGCACTAGCAACTCTTCTGAAT TTGTTAATCGTGGTCTTCTTCTCTGGAACCAAACAAGGCAGCAATGGCTTGGAAATAAAAAGACTCAGAACAGGAAGCAAGTTCGAGAGCCTACAATAAG TTGGAATGCCACCTACGAGAGTCTACTTGGGAGTAACAAGCCGTTTGCTCGACCTGTCCCTCTTGCTGAAATGGTGGATTTTCTTGTTGATGTATGGGAG CAGGAAGGCTTGTATGACTGA
AA sequence Show only first row Show all	>Potri.018G027800.1 pacid=42801585 polypeptide=Potri.018G027800.1.p locus=Potri.018G027800 ID=Potri.018G027800.1.v4.1 annot-version=v4.1 MYSRCSFLTQTGRSFGNKPFCSFAVFSGTYFRALLLLGMESFKRKCKAVFSSRGCFGCCAKPPTIIAIDASSKGLRVQKRSVKKSSKSNNFWSTSAGDME NSTMHSQGSLSSISTLNQQLDPSNAGSTSNSSEFVNRGLLLWNQTRQQWLGNKKTQNRKQVREPTISWNATYESLLGSNKPFARPVPLAEMVDFLVDVWE QEGLYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25360			unknown protein		Potri.018G027800 [exp]	0	1
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G027580 [exp]	11.09	0.8833
					Potri.008G210639 [exp]	21.72	0.8563
ATCG00800		ATCG00800.1, RP...	structural constituent of ribo...		Potri.002G235600 [exp]	23.10	0.8641
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Potri.001G325900 [exp]	27.12	0.8511	Pt-ATGP4.2
					Potri.018G110450 [exp]	28.80	0.8420
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G137077 [exp]	33.22	0.8540
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.011G074301 [exp]	53.57	0.8388
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.011G074401 [exp]	61.18	0.8331
AT5G19485			transferases;nucleotidyltransf...		Potri.001G271800 [exp]	61.25	0.6796
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.011G075200 [exp]	61.98	0.8357

Compare expression of checked genes

Potri.018G027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.