Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RDR6.2,RDR905
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49500 1753 / 0 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT1G14790 593 / 0 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT4G11130 542 / 2e-173 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT2G05370 138 / 1e-37 unknown protein AT2G19930 123 / 3e-28 RNA-dependent RNA polymerase family protein (.1) AT2G19910 110 / 3e-24 RNA-dependent RNA polymerase family protein (.1) AT2G19920 90 / 8e-18 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253500 [exp] 2184 / 0 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.010G105200 [exp] 605 / 0 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 599 / 0 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G136100 [exp] 595 / 0 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 593 / 0 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 578 / 0 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.006G164400 [exp] 127 / 2e-29 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.007G081300 [exp] 126 / 4e-29 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002017 [exp] 1768 / 0 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002910 [exp] 1301 / 0 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10019164 [exp] 561 / 1e-180 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10042134 [exp] 524 / 2e-166 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002909 [exp] 368 / 3e-118 AT3G49500 333 / 3e-106 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002361 [exp] 339 / 1e-103 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10034262 [exp] 201 / 1e-56 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 97 / 7e-20 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1) Lus10034390 [exp] 72 / 1e-14 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10034391 [exp] 41 / 0.0006 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [poplar] [flax] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Potri.018G028100.3 pacid=42801434 polypeptide=Potri.018G028100.3.p locus=Potri.018G028100 ID=Potri.018G028100.3.v4.1 annot-version=v4.1 ATGGAGGCAGAAGGAAGTGCGAAGGAAACAGTGGTAACCCAAGTTAGTGTTGGTGGGTTTGACATTCATGTCACTGCAAAAGATCTTTTGGAATACTTGG ACAGAGCTATTGGACTTGTTTGGCGGTGTAGATTGAAGACTTCGTGGACTCCTCCTGAGTCCTATCCCAACTTTGAGATCACTGACATCACAAAGATCGA AAGGACAGAAGATTATAGGAGAGTGGTGCCCCATGCATTTGTGCACTTTGCCTTACCTCAATCAGCAACTTTGGCTATGAATGCTTCAGGGCGCTGCGAG CTCTTCTTGAATAACAAAGCATTGAAGGTTAGCTTGGGGCCTAAAAATCCTTTCACCTTGAATCAGCGGAGGAGGACAACAACTCCCTTTAAGCTATCTG ATGTGGGCTTTGAGATAGGGAACTTGGTTAGTCGTGACGAGTTCTTTGTTGGTTGGAGAGGACCTCCCTCTGGTGTCGATTTTCTAGTAGATCCTTTTGA TGGAACATGCAAGTTTTGTTTCTCTAGAAATACTGCTTTCTCCCTCAAAAGTACATCTGAACATGCTGTTATAAAATGTGATTTTAAAGTGGAGTTCCTA GTGAGAGACATTAATGAGATCATACAGTACACTGAAACATCATGTCTAGTTCTTTTGTTGCAGCTGGCTTCTGCACCTTGGGTCTGGTATAGAACTGCTG ATGATGATATTGAAGCATGGGTTCCTTTTGATTTGTTGGATGATGATGATCCTTGGATCCGGACCACAGATTTTACAGCGAGCGGGGCTATTGGTCGGTG CCATTCTTATAGAGTATCAATCCCTCCTCGTCACGGTTCAAAGTTGAGAAAGGCTGTGAAATATCTCAAGGAACGGAGGGTTCAGGTCCTTCAGGAGGAA AACCACAGACGACGGATCAGGATTTTGGATGAACCGGACTTTGGAATGCCCATGTCAGATCCATTCTTTTGTATTCATCACAAGGAGGGAATAGCTTTTG AGGTATTGTTTTTGGTGAATGCTGTCATGCATAAAGGCATATTCAATCAGCATCAATTATCAAATGACTTCTTTGACTTGTTGAGAAATCAACATACTGA AGTCAATGTGTCTGCACTGAAGCACATCTGTACTTACAGACGCCCAGTGTTCAACGCTTATAGGAGGCTTAAAGCTGTCCAAGAATGGTTGCTGAAGAAC CCAAACCTTTTTAAAAATCCGAAACAGTTGGGCGACGTTGTAGAGATTAGAAGGCTGGTCATCACTCCAACTAAAGCCTACTGCCTTCCACCTGAAGTCG AACTCTCCAATAGGGTTTTGAGGAAATACAAGGATGTTGCTGATCGATTTCTCAGAGTTACCTTCATGGATGAGGGCTTGCAGAGAATGAATTCAAATGT TCTAAACTATTATGTTGCTCCTATTGTCAGAGACATCACATCTAACTCCTTCCCTCAGAAAACAAGAATCTTCAAACGAGTGAGGAGCATTCTGACTGAA GGGTTTTATTTATGTGGTCGGAGATACTCCTTTTTGGCCTTCTCAGCCAATCAACTGAGGGACCAATCTGCTTGGTTTTTTTCTGAAGAAAGAAACATAA GTGTGCTGGATGTTAAAAGCTGGATGGGGAAGTTCACCAATAGGAACATTGCAAAGTGTGCGGCAAGAATGGGTCAGTGTTTCTCCTCCACTTATGCGAC TATAGAAGTTCCACCAGAGGAGGTTAATTCTGATCTTCCTGATATTGAAAGGAATGGCTATGTTTTCTCTGATGGCATTGGCATTATCACTCCAGATCTT GCCAGGGAAGTTGCAGAGAAACTCAAGTTAGATATTGATCCCCCCTGCGCTTACCAAATCAGATATGCTGGTTGCAAAGGAGTTGTGGCTTGTTGGCCAG GGAAAGGTGACGGTGTCCGCTTGTCTTTGAGGCCAAGCATGAACAAGTTCCAATCAAACCATACGACTTTGGAAATCTGTTCTTGGACTAGGTTTCAACC TGGTTTCCTAAACAGGCAGATAATTACACTGCTCTCAACTCTCAATGTTCCTGATGCAGTATTCTGGAAGATGCAGGAAACTATGGTCTCCAAACTAAAC CAAATGTTTGTTAACTCGGATGTTGCATTTGATGTCCTCACTGCATCATGTGCTGACCAAGGGAATGTTGCTGCTATAATGTTGAGTGCAGGTTTCAAGC CTGATAGGGAACCTCATTTACGAGGAATGCTAACTTGTGTAAGGGCTGCACAGCTTTGGGACCTTAGAGAGAAGACTCGAATTTTTGTTCCCTCTGGAAG ATGGTTGATGGGCTGCTTGGACGAGCTAGGGATGCTTGAACAAGGCCAGTGCTTTATTCAAGTGTCAAATTCATCTCTGGAAAAATGTTTTATGAAGCAT GGCGCAAAGTTTAGTGAGGCCGAGAAAAATCTTCAAGTCATCAAAGGGACTGTGGTAATAGCTAAGAATCCCTGTCTTCATCCTGGAGATGTAAGGGTTT TGGAAGCGGTTGATGTCCCAGGACTTCACCACTTGTATGATTGCCTTGTCTTCCCACAGAAAGGTGAGAGGCCCCACACAAATGAAGCTTCTGGAAGTGA TCTTGATGGGGATCTCTACTTTGTCACTTGGGATGAAAACCTAATTCCTCCCAGTAAGAGGAGCTGGATACCCATGCAGTACGACGCTGCAGAAGCCAAA CTTCTTGCTCGTCCTGTCAATCATCAGGATATTATAGAATTCTTTGCAAAAAACATGGTGAACGACAATTTAGGGGCAATATGCAATGCACACGTGGTTC ATGCTGATTTGAGTGAGTATGGTGCCACGGATAAGAACTGCCTAACGCTGGCAGAGTTAGCCGCTACAGCTGTTGATTTTCCCAAGACTGGGAAAGTTGT TAGCATGCCTCCATATTTGAAACCCAAAATGTACCCAGATTTTATGGGGAAAGAGGAATACCAGTCCTACAAGTCAGAGAAAATTTTGGGAAGGCTATAT CGCCAGATAAAAGATGCTTATGATGAAGATGTAGCTGCATCTTCGGAGCTTAATCTCGTGCCTGGTGATATCCCTTATGATTCTGATCTTGAAGTGGTGG GAGCTAGTGATTATATCAGTGATGCCTGGGATCAAAAGTGCTCATATGATGGGCAGTTGAATGGCCTTCTTTCTCAGTATAAAGTGAAGAGGGAGGAAGA GGTTGTAACAGGGCACATATGGTCTATGCCGAAGTACAGCAGCCGGAAGCAAGGAGAGCTGAAAGATAGGCTTAAACATTCTTACAATTCTTTAAAGAAA GAATTCAGGCAAATCTTTGAGAAAATGGATTTAGAGTTTGAGCAACTTGAGGATGGTGAAAAGAACAAGCTTTATGAGCAGAAGGCGTCAGCTTGGTACC AGGTTGTCTACCATCCTCATTGGGTGAAGAAATCTCTGGAGTTACAAGATCCAGATGGTGCTGGTACTTCAGTGATGCTGAGCTTTGCTTGGATTGCAGC TGATTACCTTGCTCGGATCAAGATTCGGCATAGGGAAACAGGAAATGTTGACTCTGCTAAGCCTGTCAACTCACTGGCCAAGTATCTTGCTGACAGAATG TGA
AA sequence Show only first row Show all	>Potri.018G028100.3 pacid=42801434 polypeptide=Potri.018G028100.3.p locus=Potri.018G028100 ID=Potri.018G028100.3.v4.1 annot-version=v4.1 MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCE LFLNNKALKVSLGPKNPFTLNQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSEHAVIKCDFKVEFL VRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKN PNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTE GFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLN QMFVNSDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKH GAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLY RQIKDAYDEDVAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQGELKDRLKHSYNSLKK EFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Potri.018G028100 [exp]	0	1	RDR6.2,RDR905
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Potri.013G115200 [exp]	13.26	0.7864	Pt-SUT1.2
AT5G03970			F-box associated ubiquitinatio...		Potri.005G124500 [exp]	16.15	0.7531
					Potri.008G062950 [exp]	18.97	0.7153
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.003G205000 [exp]	20.73	0.7663
AT1G71310		RAD52-1B.2, RAD...	radiation sensitive 51-1, coba...		Potri.019G068500 [exp]	22.29	0.7192
AT4G22290			Ubiquitin-specific protease fa...		Potri.011G022600 [exp]	23.55	0.7329
AT3G14250			RING/U-box superfamily protein...		Potri.003G187700 [exp]	24.73	0.7212
AT4G10270			Wound-responsive family protei...		Potri.019G117100 [exp]	25.45	0.6995
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012700 [exp]	28.14	0.6632
AT4G10270			Wound-responsive family protei...		Potri.019G116932 [exp]	32.49	0.6632

Compare expression of checked genes

Potri.018G028100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.