Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26660 321 / 2e-110 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT5G20150 313 / 5e-108 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT5G15330 200 / 1e-62 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT2G45130 177 / 1e-54 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT4G22990 45 / 4e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT4G11810 44 / 8e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253400 [exp] 467 / 3e-168 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G131500 [exp] 330 / 9e-114 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.006G069500 [exp] 325 / 1e-111 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.002G143900 [exp] 209 / 5e-67 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 207 / 3e-66 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.001G193200 [exp] 175 / 2e-54 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.017G086600 [exp] 172 / 1e-51 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G135950 [exp] 88 / 1e-21 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.003G120600 [exp] 44 / 8e-05 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002018 [exp] 400 / 9e-142 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002908 [exp] 398 / 6e-141 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10043272 [exp] 330 / 6e-114 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10030095 [exp] 317 / 5e-109 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 315 / 4e-106 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10009314 [exp] 53 / 1e-07 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 45 / 5e-05 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 43 / 0.0002 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Potri.018G028200.1 pacid=42800807 polypeptide=Potri.018G028200.1.p locus=Potri.018G028200 ID=Potri.018G028200.1.v4.1 annot-version=v4.1 ATGAAGTTCTGGAAGAGCTTAAGTAATTTAATGGAGGAAACGTTGCCGGATTGGAGAGATAAGTTCTTATCTTATAAAGATTTGAAGAAACAATTGAAGT TAATTTATCCTAAGGAGCGTGATAAGCCACTGAATAAACGGCCTAGATTGGACGATGATCAAATGGACAGTGGTGAGGCGGAGAAGGAGGTAATTGATTT TGTTAGGGTTTTGGAAGATGAGATGGAGAAGTTTAATTCCTTTATTGTCGAGAAAGAAGAGGATTATGTTATCAAATGGAAGGAGCTACAAGATAGAGCA GAAAAGGCGAAGGATTCAAATGAAGAGCTGATGAAAGTAGGGAGGGAGATAGTGGATTTTCATGGAGAGATGGTGTTGTTGGAGAATTACAGTGCCCTTA ACTATACAGGACTAGTGAAGATACTGAAGAAATATGATAAGAGAACTGGAGCTCTGGTCCGCATGCCCTTCATCCAAAGGATTATGCAACAGCCATTCTA CACAACTCATGTACTTAACAAGCTTATTAAGGAGTGTGAGACGATTCTGGATTATATTTTCTCTAGAAAAGAACCATCAGTCTCACCTCAAATAACTGAT GAGATAAGCGGCCTTGATACCAAAACTTCAACGGAAAGTTCAGAGAGGTCGCTCAGAGTTCCCAGCGAACTCCCAGAGATAGAGTATATGGAAAGCATGT ACGTGAAGCTAACACTGTCAGCACTTCGCGTCTTGAAGGATGTTCGGAGTGGAAGCTCAACTGTAAGCGTGTATTCATTGCCCCCTTTGCAAATTAATAC ACAGGAGGGGGATTGGAAGAAAGTTAATGTCTTGGAACAAGCAGCCAAATAG
AA sequence Show only first row Show all	>Potri.018G028200.1 pacid=42800807 polypeptide=Potri.018G028200.1.p locus=Potri.018G028200 ID=Potri.018G028200.1.v4.1 annot-version=v4.1 MKFWKSLSNLMEETLPDWRDKFLSYKDLKKQLKLIYPKERDKPLNKRPRLDDDQMDSGEAEKEVIDFVRVLEDEMEKFNSFIVEKEEDYVIKWKELQDRA EKAKDSNEELMKVGREIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALVRMPFIQRIMQQPFYTTHVLNKLIKECETILDYIFSRKEPSVSPQITD EISGLDTKTSTESSERSLRVPSELPEIEYMESMYVKLTLSALRVLKDVRSGSSTVSVYSLPPLQINTQEGDWKKVNVLEQAAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.018G028200 [exp]	0	1
AT3G57990			unknown protein		Potri.006G191800 [exp]	7.21	0.8228
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	13.03	0.7887
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.011G050600 [exp]	22.58	0.7558
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.017G058400 [exp]	25.92	0.7329	Pt-DNAJ.1
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.016G030900 [exp]	36.66	0.7191
					Potri.015G008200 [exp]	45.82	0.7159
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.013G028700 [exp]	49.31	0.6872
AT2G36330			Uncharacterised protein family...		Potri.015G075100 [exp]	55.96	0.6911
AT2G15695			Protein of unknown function DU...		Potri.009G103500 [exp]	58.74	0.7404
AT5G24870			RING/U-box superfamily protein...		Potri.006G274700 [exp]	68.99	0.7210

Compare expression of checked genes

Potri.018G028200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.