Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68620 200 / 6e-62 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 196 / 3e-60 ATCXE17 carboxyesterase 17 (.1) AT2G03550 161 / 3e-47 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 160 / 5e-47 alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 157 / 9e-46 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48700 156 / 3e-45 ATCXE13 carboxyesterase 13 (.1) AT3G48690 154 / 1e-44 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 150 / 3e-43 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 149 / 2e-42 ATCXE20 carboxyesterase 20 (.1) AT5G27320 147 / 1e-41 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253300 [exp] 488 / 3e-176 AT5G16080 173 / 9e-52 carboxyesterase 17 (.1) Potri.018G028400 [exp] 231 / 3e-76 AT1G68620 100 / 3e-25 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G101400 [exp] 201 / 2e-62 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.017G113700 [exp] 193 / 2e-59 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.009G155800 [exp] 179 / 4e-54 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G127600 [exp] 178 / 3e-53 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.009G104000 [exp] 176 / 4e-53 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105000 [exp] 174 / 2e-52 AT2G03550 234 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G118400 [exp] 175 / 3e-52 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002907 [exp] 462 / 2e-165 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10002019 [exp] 455 / 2e-162 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10033548 [exp] 203 / 5e-63 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10017587 [exp] 191 / 2e-58 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10036168 [exp] 182 / 4e-55 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10012073 [exp] 172 / 2e-51 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10042662 [exp] 171 / 5e-51 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10008439 [exp] 169 / 3e-50 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10021745 [exp] 169 / 5e-50 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 168 / 1e-49 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00135 [poplar] [flax] COesterase Carboxylesterase family
Representative CDS sequence Show only first row Show all	>Potri.018G028300.1 pacid=42801445 polypeptide=Potri.018G028300.1.p locus=Potri.018G028300 ID=Potri.018G028300.1.v4.1 annot-version=v4.1 ATGTCCATTGTTGCAGAAGCACCTGGATACCTCCAAGTCTTTTCTGATGGTTCTGTAAAACGGTTTGCCTCAGAAACAGTCCCTGACTCAGCGGAATCAT ATTCCGATGGATTCAAGTTCAAGGATGTGCTGATTGACTCATCGAAGCCAATAACCGCGAGGTTGTTCGTTCCTGATACTCAAGGGTCTGTGAGTCAGCT TCCAGTTGTGGTTTATTTTCATGGTGGTGGCTTTTGTATTTGCTCAACCACCTGGCTTGGATTCCATCACTTCCTTGGAGACTTCTCCGTTGCATCCCAG TCCATTGTCCTTTCCGTTGACTATCGTTTGGCACCGGAGAATCGCCTTCCGATTGCTTACGATGATTGTTTCCGCTCACTTGAATGGCTAAGTAACAATG TGAGTTCTGAACCTTGGCTTAAGCAGTCTGATCTTTCTCGAGTGTTTCTATCCGGAGACAGTGCTGGAGGGAACATTACACACCAGGTTGCTATCAGGGC AGTAAGGAGTAAAACCTATCAGGTTGAAATCAAAGGATTGATGTTGATTCATCCTTATTTTGGAAGTGAGAAAAGGACTAAGAAAGAGATGTCTGAAGGG GCACCAGGAGACGTGGCGATGAATGACATGTTCTGGGGTCTAAGTATACCAGAAGGGTCTAACCGAGATTACTTTGGATGTAACTTCGAGATGCAAGATG TATCTGCAGCTGAATGGAGTGCTTTTCCAGCAGTGGCGGTTTATGTGGCTGGCTTGGATTTCTTGAATGAAAGGGGAGTGATGTATGCACAGTTTCTGGC AAAGAAAGGGGTCAAAGAAGTGACACTGGTGGAAGCTGAGGGGCAAAATCATGTCTTTCATGTGTTTTATCCCAAATCTGAGGCAACTCTCGTTCTTCAA CAACAGATGAGTGAGTTTATGAAGATCCATTAG
AA sequence Show only first row Show all	>Potri.018G028300.1 pacid=42801445 polypeptide=Potri.018G028300.1.p locus=Potri.018G028300 ID=Potri.018G028300.1.v4.1 annot-version=v4.1 MSIVAEAPGYLQVFSDGSVKRFASETVPDSAESYSDGFKFKDVLIDSSKPITARLFVPDTQGSVSQLPVVVYFHGGGFCICSTTWLGFHHFLGDFSVASQ SIVLSVDYRLAPENRLPIAYDDCFRSLEWLSNNVSSEPWLKQSDLSRVFLSGDSAGGNITHQVAIRAVRSKTYQVEIKGLMLIHPYFGSEKRTKKEMSEG APGDVAMNDMFWGLSIPEGSNRDYFGCNFEMQDVSAAEWSAFPAVAVYVAGLDFLNERGVMYAQFLAKKGVKEVTLVEAEGQNHVFHVFYPKSEATLVLQ QQMSEFMKIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.018G028300 [exp]	0	1
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.010G092400 [exp]	20.92	0.9356
AT3G18670			Ankyrin repeat family protein ...		Potri.015G118600 [exp]	24.85	0.9289
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108766 [exp]	29.74	0.9299
AT1G32780			GroES-like zinc-binding dehydr...		Potri.011G152900 [exp]	33.63	0.9177
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.011G021216 [exp]	39.69	0.9271
AT5G18470			Curculin-like (mannose-binding...		Potri.013G050500 [exp]	43.26	0.8969
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.001G369700 [exp]	46.58	0.9087
AT4G31980			unknown protein		Potri.003G209832 [exp]	51.96	0.9245
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.015G133100 [exp]	53.96	0.8916	AAT1.2,PtrCAT12
AT1G15780			unknown protein		Potri.001G033400 [exp]	55.20	0.9111

Compare expression of checked genes

Potri.018G028300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.