Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) AT4G35670 350 / 1e-117 Pectin lyase-like superfamily protein (.1) AT3G15720 338 / 4e-112 Pectin lyase-like superfamily protein (.1.2) AT5G17200 329 / 3e-109 Pectin lyase-like superfamily protein (.1) AT4G32375 323 / 6e-106 Pectin lyase-like superfamily protein (.1) AT5G44840 312 / 4e-103 Pectin lyase-like superfamily protein (.1) AT1G80170 287 / 1e-92 Pectin lyase-like superfamily protein (.1) AT5G44830 281 / 1e-91 Pectin lyase-like superfamily protein (.1) AT4G32370 270 / 2e-87 Pectin lyase-like superfamily protein (.1) AT1G23460 264 / 2e-83 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252900 [exp] 387 / 2e-132 AT5G44840 297 / 3e-98 Pectin lyase-like superfamily protein (.1) Potri.012G119700 [exp] 376 / 5e-128 AT5G17200 356 / 1e-120 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 308 / 3e-101 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 287 / 1e-92 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 277 / 2e-88 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 273 / 9e-87 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 268 / 1e-84 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 259 / 2e-81 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 258 / 5e-81 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040610 [exp] 361 / 3e-121 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 358 / 8e-121 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10016940 [exp] 347 / 5e-116 AT5G17200 320 / 6e-106 Pectin lyase-like superfamily protein (.1) Lus10014826 [exp] 330 / 1e-108 AT5G17200 301 / 1e-97 Pectin lyase-like superfamily protein (.1) Lus10036035 [exp] 321 / 4e-107 AT3G15720 339 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10036084 [exp] 284 / 3e-91 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 279 / 3e-89 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10040604 [exp] 263 / 1e-84 AT3G15720 249 / 1e-79 Pectin lyase-like superfamily protein (.1.2) Lus10029511 [exp] 263 / 5e-83 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 264 / 8e-83 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.018G028700.2 pacid=42801417 polypeptide=Potri.018G028700.2.p locus=Potri.018G028700 ID=Potri.018G028700.2.v4.1 annot-version=v4.1 ATGTGGATAGCTAGAGGAAAAAAAAAGATGAAAGAGAAAAATGAGAGGAGAGAGAGGCCAAGAGGGGAGAGGAGGGATAAAGAGAAGACCAAGCTTGGCA TGCAAATAGTTGTGTTTGGACTTGCTGCCATCTTTTTGATCCTTTGCATTGCTGCGTCTAGTTTTGGCATTGGACATGGCCAAAAAGTTTTTAATGTGGT TGATTTTGGTGCCATAGGAGACGGCCAGATTGATGATACCAATGCCTTTTTATCTGCATGGCAAGCTTTGTGTGGAGATGATGTAGCTCAGGGTACACCT TCCCTTCAGATACCTGAAGGAAAAACATTTTTACTGCAGCCTGTGAAATTCCAGGGTCCTTGCAAGTCTGTATTTGTTCATGTCCAGGTTCAAGGGAAAA TCATCGCTCCCAACACCATTGAGGAATGGAATAACTGTCAAGCAGATTACTGGATAGGCTTTGTAGGCGTAGCCAATCTCAATATGTATGGATCAGGACT AATTGATGGCCAGGGTTCGGTTTGGTGGATGCGTGCTATGCAAGCCAACAGCTTAAATGCCCGTAAGATAGCCTGCAACCCTCCCAGTATACAATCGAGA ACGTTGCAGGCTCTGAACTTCGAGAAATGTGATGATCTTCAGCTTAGTGGTCTAACTCATGTTGACAGTCCAAAAGGCCATATAGGAATCACTGATTGCA ATGGTGTCCTTATCTCTAATCTTAATATCGCTGCACCTGAAAACAGCCCCAACACGGATGGAATCGACATGGCTAGATCGACCAATGTTCATATTCAAGA TTCTATGATAGCAACTGGTGATGACTGTGTTGCTATCAATGGTGGCTGCTCTTATATCAACATCACCAACATTGCCTGTGGACCAGGCCATGGCATTAGC GTAGGAAGTTTAGGAAAGGATGGACAGTATGATACAGTGGAAGAGGTGCATGTTCGGAACTGTAGCTTCACCGGGACTCAAAACGCGGCAAGAATCAAGA CATGGCAGGGAGGATCCGGGTATGCAAGGAAGATTTCCTATGAGCAAATCACGCTTGTAGCATCTAAAAATCCTATCATAATTGATCAGTATTACTGCGA TGGTGTAAATAATTGCAGAAACTCGTCGACAGCACTGCAAGTGAGCGACGTGACATACAGTGGCTTCCAAGGGACATCTGTAGATGAAGAAGCAATCAGA TTGGACTGCAGTGACAGAGGTTGTATCAACATTGTAATGGACAATATCAACATAACCTCATTGGATCCAGGAAAAACTACTTATGCCTATTGCGAACACA CTAGTGGAACATCTTGGTTTACTGCACCGTATGTGCCCTGCCTATCA
AA sequence Show only first row Show all	>Potri.018G028700.2 pacid=42801417 polypeptide=Potri.018G028700.2.p locus=Potri.018G028700 ID=Potri.018G028700.2.v4.1 annot-version=v4.1 MWIARGKKKMKEKNERRERPRGERRDKEKTKLGMQIVVFGLAAIFLILCIAASSFGIGHGQKVFNVVDFGAIGDGQIDDTNAFLSAWQALCGDDVAQGTP SLQIPEGKTFLLQPVKFQGPCKSVFVHVQVQGKIIAPNTIEEWNNCQADYWIGFVGVANLNMYGSGLIDGQGSVWWMRAMQANSLNARKIACNPPSIQSR TLQALNFEKCDDLQLSGLTHVDSPKGHIGITDCNGVLISNLNIAAPENSPNTDGIDMARSTNVHIQDSMIATGDDCVAINGGCSYINITNIACGPGHGIS VGSLGKDGQYDTVEEVHVRNCSFTGTQNAARIKTWQGGSGYARKISYEQITLVASKNPIIIDQYYCDGVNNCRNSSTALQVSDVTYSGFQGTSVDEEAIR LDCSDRGCINIVMDNINITSLDPGKTTYAYCEHTSGTSWFTAPYVPCLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27530			Pectin lyase-like superfamily ...		Potri.018G028700 [exp]	0	1
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G298000 [exp]	20.78	1.0000
AT1G52900			Toll-Interleukin-Resistance (T...		Potri.001G403800 [exp]	25.92	1.0000
AT1G55790			Domain of unknown function (DU...		Potri.001G438200 [exp]	28.56	1.0000
					Potri.001G276804 [exp]	31.36	1.0000
					Potri.001G330250 [exp]	35.07	1.0000
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Potri.005G111800 [exp]	43.81	1.0000
					Potri.001G466250 [exp]	48.34	1.0000
AT5G44840			Pectin lyase-like superfamily ...		Potri.006G252900 [exp]	48.49	1.0000
					Potri.013G052950 [exp]	60.00	1.0000
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160200 [exp]	61.74	1.0000

Compare expression of checked genes

Potri.018G028700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.