Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 371 / 1e-119 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 362 / 4e-116 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 357 / 6e-114 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 333 / 1e-104 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01550 328 / 1e-102 LECRKA4.2 lectin receptor kinase a4.1 (.1) AT3G55550 324 / 4e-101 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01560 321 / 7e-100 LECRKA4.3 lectin receptor kinase a4.3 (.1) AT5G03140 314 / 3e-97 Concanavalin A-like lectin protein kinase family protein (.1) AT3G08870 304 / 2e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 302 / 5e-93 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004200 [exp] 399 / 6e-130 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G045000 [exp] 375 / 3e-121 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 376 / 8e-121 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 376 / 8e-121 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 374 / 1e-120 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 370 / 8e-119 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G193000 [exp] 369 / 1e-118 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 370 / 2e-118 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 365 / 1e-117 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020446 [exp] 380 / 6e-122 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 372 / 3e-119 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 368 / 2e-118 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 368 / 1e-117 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 367 / 1e-117 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 372 / 2e-117 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 362 / 4e-115 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 362 / 4e-115 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 355 / 2e-112 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 354 / 8e-112 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.018G028800.1 pacid=42801775 polypeptide=Potri.018G028800.1.p locus=Potri.018G028800 ID=Potri.018G028800.1.v4.1 annot-version=v4.1 ATGGGTATTCTTCTCTTCCTAATCTGCATCTTTCTCAATGAAGCAGCTCTATACCAAGCTTCTTTAGATCCCAGTGTGAAGGAGACATCCTTCTCGTACC CCTCGTTCGATGCTGATAGTTGCAATACTACCCTGATATGTATGGGCTCAGTAACCGTTGGCGACAGGCGCTTGAAACTTACACCAGAACCACTGCCAGT CGATTTGAACTCGACACAACCTGTGCTGAAGGACCAGATAGGCAGGGTTCTATTTCATCAGCCTGTGATTGCATGGCCCGCGTATATCAATACAACGTTC ACAGTCAGGATTTTTACCTTTCCAAATACGACCACCAATGGAGATGGGATGACGTTTATTATGGCTCAGAATAACAGCCCTTCTCCACCTGACAGCAAGG GCTCATATCTTGGAGTCCTGGATAAGTCAACAGAAGGTGGTGTTACTCGACAGATAGCTGTGGAGCTTGACACTTACCCGAATGAGTTCGATCCAGATGG AAACCATATGGGCATTGATACAACAAGCATAACAAATCCAGTAGTAGCTAAGAGTCTGAACAGAACAGGCATTTACCTTACAAGTGGAAGAGATATCACG GTTCAAATTGTTTACGATAGCTCGACAGAGGAGCTCCAAATATTTGTTGCTTATGCAGGGAACCCACTAGTGAGTTTCCTGAATCAGTCTATTGACATGT CAAAATGGGTTCCGAATTCTGTTTATGTAGGCTTCACAGCCGCTACAGGGCCTTTCTCAGAGGCTCATGAGGTTTTGAATTGGACTTTTCAGTCAACATC ATTGCCAGACTTGAAGAAAGCTTCTGAGAAAGAAAATAGAAAAAGGTTCTTCTTGACTGTTGCAATTGTCGTGGCAGGATTGGGGGTGCTGATACTATTC ACTTTACCGCTTGCTTTAAGGGATTTAAGGAAGAGAAAAGAGAGGAGTAAAAGGAGAGCTGAAATTGAAAGCCGGTCAATGAGAGCAGCAAATGCACCCA AAATGTTTACATATAGACAACTCTCAAAGGCTACTCTTAAATTCAGCAAGGAAAACCTGTTAGGAACTGGTGGTTTTGGAAGTGTTTACAAAGGTGTCAT TTCCTCGGATCCTCCCATGATCTTAGCAGTAAAAAAGATCTCAGCAACTTCAAGACAAGGTGAAAAGGAGTATTTGGCAGAAATATGCACCATAGGGCGT ATGCGGCACAAGAACATAGTGCAACTCCAAGGCTGGTGCCACGAGCGCGAGAAACTTCTTTTGGTTTACGAATACATGCCCAACGGCAGCCTTGATTGCT ACATCGGCAGGCGCTTTCTTGACTGGAACACTAGGTACAAAATATTAACAGGCCTGGCATCAGCATTACTTTACCTCCATGAGCAATGTGGCCATCCTAT TGTTCACCGAGATGTTAAGCCGAATAATGTAATGTTGGACTCCGATTTCAATGCTCATTTAGGCGATTTCGGCCTTGCAAGATTGCTCAGAAGCGATTCT GCAGTTACAACAATGCTTGCTGGCACTCCAGGATACTTGGCTCCTGAAGTAGCTTACACAGGAAAGGCTGCTCCAGAATCTGATGTCTATAGCTTTGGCA TGGTTGTAATAGAAGTCGTGACAGGACAACGGTCAAGGGGTATTTTCGAAGAAAATAGTTTACTAGATTATGTATGGAGTTTACATGGAAGAAAAACATT GCTCAAAGGTGTTGACCGAAAGCTAGAAGGCAAGTATGATGAACAACAAGTGAAGAGGACATTACTTGTTGGACTTGCTTGCTTGCATCCTGACACTAAG AGTCGTCCGACTATTAGAAAAGTAGAGCAGATTTTCTTGAACCCCGATGAGCCTCTGATGGAGGTGCCAGAATCGAGGCCAAATGCAATTTTTGTGCCAC TCTCTTCCTCTGCTTCAACCACAAGGTCTGCAACTGATTTTGGGTCTAAAAGTGACGATCTCTTGTTGCAGTCAACCCCTGAAGAGATGGTCCTTGATGA GATTGTTGTCCACCATGAAGATTCTGACATATAA
AA sequence Show only first row Show all	>Potri.018G028800.1 pacid=42801775 polypeptide=Potri.018G028800.1.p locus=Potri.018G028800 ID=Potri.018G028800.1.v4.1 annot-version=v4.1 MGILLFLICIFLNEAALYQASLDPSVKETSFSYPSFDADSCNTTLICMGSVTVGDRRLKLTPEPLPVDLNSTQPVLKDQIGRVLFHQPVIAWPAYINTTF TVRIFTFPNTTTNGDGMTFIMAQNNSPSPPDSKGSYLGVLDKSTEGGVTRQIAVELDTYPNEFDPDGNHMGIDTTSITNPVVAKSLNRTGIYLTSGRDIT VQIVYDSSTEELQIFVAYAGNPLVSFLNQSIDMSKWVPNSVYVGFTAATGPFSEAHEVLNWTFQSTSLPDLKKASEKENRKRFFLTVAIVVAGLGVLILF TLPLALRDLRKRKERSKRRAEIESRSMRAANAPKMFTYRQLSKATLKFSKENLLGTGGFGSVYKGVISSDPPMILAVKKISATSRQGEKEYLAEICTIGR MRHKNIVQLQGWCHEREKLLLVYEYMPNGSLDCYIGRRFLDWNTRYKILTGLASALLYLHEQCGHPIVHRDVKPNNVMLDSDFNAHLGDFGLARLLRSDS AVTTMLAGTPGYLAPEVAYTGKAAPESDVYSFGMVVIEVVTGQRSRGIFEENSLLDYVWSLHGRKTLLKGVDRKLEGKYDEQQVKRTLLVGLACLHPDTK SRPTIRKVEQIFLNPDEPLMEVPESRPNAIFVPLSSSASTTRSATDFGSKSDDLLLQSTPEEMVLDEIVVHHEDSDI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06740			Concanavalin A-like lectin pro...		Potri.018G028800 [exp]	0	1
AT4G03180			unknown protein		Potri.014G134700 [exp]	8.36	0.7729
AT3G09280			unknown protein		Potri.004G029700 [exp]	18.49	0.7391
					Potri.012G066225 [exp]	21.30	0.7829
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Potri.004G069400 [exp]	23.66	0.7594
AT1G73240			unknown protein		Potri.003G213050 [exp]	29.79	0.7774
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.001G001250 [exp]	29.93	0.7704
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	38.40	0.7761
AT5G05240			Uncharacterised conserved prot...		Potri.013G091100 [exp]	42.35	0.7754
AT5G06220			LETM1-like protein (.1.2)		Potri.001G187100 [exp]	45.19	0.7703
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.009G135100 [exp]	50.75	0.7472	NFC903,Pt-MSI2.1

Compare expression of checked genes

Potri.018G028800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.