Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29250 180 / 1e-59 Alba DNA/RNA-binding protein (.1) AT2G34160 178 / 5e-59 Alba DNA/RNA-binding protein (.1) AT3G04620 160 / 3e-51 DAN1 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252000 [exp] 215 / 2e-73 AT1G29250 164 / 2e-53 Alba DNA/RNA-binding protein (.1) Potri.005G056000 [exp] 164 / 6e-53 AT3G04620 177 / 8e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Potri.013G042900 [exp] 163 / 1e-52 AT3G04620 179 / 2e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019423 [exp] 189 / 6e-63 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1) Lus10043279 [exp] 189 / 6e-63 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1) Lus10002901 [exp] 185 / 2e-61 AT2G34160 180 / 1e-59 Alba DNA/RNA-binding protein (.1) Lus10002027 [exp] 183 / 1e-60 AT2G34160 193 / 6e-65 Alba DNA/RNA-binding protein (.1) Lus10005531 [exp] 164 / 6e-53 AT3G04620 194 / 2e-64 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Lus10006564 [exp] 164 / 9e-53 AT3G04620 189 / 2e-62 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Lus10022212 [exp] 109 / 1e-30 AT2G34160 107 / 4e-30 Alba DNA/RNA-binding protein (.1) Lus10019424 [exp] 90 / 1e-21 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10021222 [exp] 73 / 5e-17 AT2G34160 75 / 1e-17 Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [poplar] [flax] AlbA PF01918 [poplar] [flax] Alba Alba
Representative CDS sequence Show only first row Show all	>Potri.018G029300.2 pacid=42800976 polypeptide=Potri.018G029300.2.p locus=Potri.018G029300 ID=Potri.018G029300.2.v4.1 annot-version=v4.1 ATGGAAGGAATCACAGAGGGTGTTACCAACTTAAACATCACAGCAGCAGCAGATTCAGGCAATAACAAGAAGAACCGAATCCAAGTTTCTAACACCAAAA AACCTCTTTTCTTCTACGTTAATCTCGCCAAGAGGTACATGCAACAGCACAATGAAGTGGAGCTCTCTGCTCTTGGGATGGCAATAGCCACTGTTGTTAC CATTGCTGAGATCTTGAAGAATAATGGACTTGCTGTTGAGAAAAAGATCACGACGTCCACAGTTGACATGAGGGAAGAAACAGGAGGGCGTCCTGTTCCG AAAGCTAAGATTGAAATATTGCTAGGCAAGACAGAAAAGTTTGATGAGTTGATGGCTGCCGCTGCTGCACAGGAAGCAGCAGATGCAGAGGAGCAGAGCT GA
AA sequence Show only first row Show all	>Potri.018G029300.2 pacid=42800976 polypeptide=Potri.018G029300.2.p locus=Potri.018G029300 ID=Potri.018G029300.2.v4.1 annot-version=v4.1 MEGITEGVTNLNITAAADSGNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDMREETGGRPVP KAKIEILLGKTEKFDELMAAAAAQEAADAEEQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29250			Alba DNA/RNA-binding protein (...		Potri.018G029300 [exp]	0	1
AT1G13690		ATE1	ATPase E1 (.1)		Potri.008G097500 [exp]	1.41	0.8420	ATE1.2
AT3G04950			unknown protein		Potri.013G034100 [exp]	2.44	0.7932
AT2G20060			Ribosomal protein L4/L1 family...		Potri.004G004800 [exp]	3.46	0.8037
AT5G55140			ribosomal protein L30 family p...		Potri.002G225600 [exp]	4.89	0.8334
AT1G57540			unknown protein		Potri.005G002900 [exp]	5.19	0.8261
AT4G13520		SMAP1	small acidic protein 1 (.1)		Potri.010G063100 [exp]	8.77	0.7771
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.002G140700 [exp]	13.41	0.7337
AT1G48200			unknown protein		Potri.002G084400 [exp]	14.73	0.7441
AT3G13230			RNA-binding KH domain-containi...		Potri.011G166000 [exp]	15.49	0.7709
AT2G18400			ribosomal protein L6 family pr...		Potri.007G024900 [exp]	16.12	0.7735

Compare expression of checked genes

Potri.018G029300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.