Plant FIBer expression Database

ASTRAY.1 (Potri.018G029500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ASTRAY.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11260 185 / 2e-60 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
AT3G17609 97 / 3e-26 bZIP HYH HY5-homolog (.1.2.3.4)
AT3G56660 44 / 2e-05 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1)
AT2G40950 42 / 8e-05 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G251800
[exp]
241 / 2e-82 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Potri.010G004200
[exp]
82 / 1e-19 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4)
Potri.016G032400
[exp]
41 / 0.0002 AT2G40950 498 / 9e-167 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002900
[exp]
196 / 1e-64 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10002028
[exp]
176 / 7e-57 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10038995
[exp]
42 / 0.0002 AT2G40950 421 / 2e-137 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10027290
[exp]
42 / 0.0002 AT2G40950 429 / 2e-140 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10010440
[exp]
40 / 0.0004 AT2G40950 466 / 5e-155 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10012104
[exp]
40 / 0.0004 AT2G40950 454 / 9e-150 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0018 bZIP PF00170 bZIP_1 bZIP transcription factor
Representative CDS sequence
>Potri.018G029500.1 pacid=42801797 polypeptide=Potri.018G029500.1.p locus=Potri.018G029500 ID=Potri.018G029500.1.v4.1 annot-version=v4.1
ATGCAAGAACAAACAACTAGTTCAATTCCTGCTAATTCTCTGCCGTCTAGCAGTGAGCGATCTTCAAGTTCTGCTCCTCAACTTGAAGTCAAAGAAGGTA
TGGAGAGTGATGAGGAAATTAGAAGAGTTCCAGAGATGAGCGGCGAGCCGGCCGGTACATCAGCCTCCGGTAGAGAGACCGGTTCAAACGCCGGTCCAGA
CCGGGTGCAGCCAACAGGAGAGGGCCAAAGTCAGAGAAAGAGAGGAAGGAGCCCAGCTGACAAAGAAAACAAAAGGCTGAAGAGGTTGCTGAGGAATAGA
GTGTCAGCACAGCAAGCAAGGGAGAGGAAGAAGGCTTACTTGACTGAGTTGGAAACAAGAGTTAAAGATTTGGAAAAGAAGAATTCTGAGCTTGAAGAGA
GGCTTTCTACTTTGCAGAATGAGAATCAAATGCTTAGACAAATATTGAAGAACACAACAGCGAGCAGGAAAGGAGGCAGCAGCGGTACTAATGCAGATGG
GTCTTAG
AA sequence
>Potri.018G029500.1 pacid=42801797 polypeptide=Potri.018G029500.1.p locus=Potri.018G029500 ID=Potri.018G029500.1.v4.1 annot-version=v4.1
MQEQTTSSIPANSLPSSSERSSSSAPQLEVKEGMESDEEIRRVPEMSGEPAGTSASGRETGSNAGPDRVQPTGEGQSQRKRGRSPADKENKRLKRLLRNR
VSAQQARERKKAYLTELETRVKDLEKKNSELEERLSTLQNENQMLRQILKNTTASRKGGSSGTNADGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11260 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE ... Potri.018G029500
[exp]
0 1 ASTRAY.1
AT1G07250 UGT71C4 UDP-glucosyl transferase 71C4 ... Potri.016G014300
[exp]
17.83 0.8316
AT2G45330 TRPT, EMB1067 2' tRNA phosphotransferase, em... Potri.002G117000
[exp]
21.70 0.8307
AT1G74040 IPMS2, MAML-3, ... SOPROPYLMALATE SYNTHASE 2, 2-i... Potri.005G083100
[exp]
39.42 0.8179
AT1G09520 unknown protein Potri.010G002200
[exp]
46.45 0.8068
AT3G01470 HD HD-ZIP-1, HAT5,... HOMEODOMAIN PROTEIN FROM ARABI... Potri.015G065400
[exp]
47.19 0.8037
AT2G40780 Nucleic acid-binding, OB-fold-... Potri.019G061200
[exp]
53.66 0.7909
AT2G36780 UDP-Glycosyltransferase superf... Potri.003G100500
[exp]
60.93 0.7746
AT1G36370 SHM7 serine hydroxymethyltransferas... Potri.001G212000
[exp]
65.92 0.7860 SHMT9
AT2G32840 proline-rich family protein (.... Potri.001G229800
[exp]
66.53 0.8032
AT3G19950 RING/U-box superfamily protein... Potri.015G028400
[exp]
71.45 0.8008

Potri.018G029500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.