Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14770 207 / 7e-57 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22780 202 / 6e-55 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22760 194 / 2e-52 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 162 / 9e-42 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G29000 125 / 1e-29 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT5G25790 119 / 3e-28 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 120 / 4e-28 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT3G16160 101 / 7e-23 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251200 [exp] 1105 / 0 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.010G083400 [exp] 230 / 2e-64 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.008G156100 [exp] 222 / 2e-61 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 201 / 5e-54 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.005G051100 [exp] 192 / 1e-50 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.013G038301 [exp] 130 / 7e-32 AT3G22780 196 / 1e-55 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 122 / 3e-29 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.006G160400 [exp] 123 / 6e-29 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G039300 [exp] 120 / 1e-27 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002033 [exp] 521 / 3e-172 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 496 / 7e-163 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 204 / 4e-55 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 189 / 3e-49 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 127 / 3e-30 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 127 / 4e-30 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 124 / 3e-29 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 121 / 3e-28 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 108 / 3e-24 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10020590 [exp] 74 / 2e-14 AT4G14770 102 / 3e-25 TESMIN/TSO1-like CXC 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [poplar] [flax] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Potri.018G030000.4 pacid=42801952 polypeptide=Potri.018G030000.4.p locus=Potri.018G030000 ID=Potri.018G030000.4.v4.1 annot-version=v4.1 ATGGATTCACCTAAAACCACCACCACCACCACCGCAACAACCACCATCTCCGCCACCACCACTGTCAGTTTATTAGATTCTCCTCCAGTTCAAGAATCCC CGTTTTCTAATTACGTAAGCAGGTTATCCCCTATTAAGCCTGTCAAGGCTTCGCATGTAGCACAAGGACTCCTAGGAATAAATTCTCCTCCACTTGTCTT CACGTCACCACGGACATTGTCAGACCGCCAAACAAATTTCTTGCGAAGGTTTCCATGTCCTCAGATATCTGGGGCAGAGATATCTAAGAATGATGGTGGA AGCAAGAAATCTGCTGATGGTCCAAAGGACCTGAGGAAATCTAGCACCTATTTGAATAGCAGACTGATTATTAATGTCCAGAAGAGCAATAATATCAACA ACTTTGAACAAGACCAACTTGGTAGCTTCTCAGGGTGCGTTGATGAGTACTTATTTGATCCCGTGGATGTAGATTGTGCAGACTCTGTTAATTTGTCATC AGAAAGTAATTTAACCAACTCGAAAATAGTTATGCTAGAATCAGATGGCATAATTGATATGGAGACAAAAGGGGATGCGTCTCAGGCCATGCCTGAGCAA GATGGAGAGGATCCTAAGGAGCATTCAACATCTGAAACTATAAAGGAAAAAATTGAAGAGGAAGGAAACATTGTTGAACAACCATCTCATGTCTGCCCAA ATTTTATGTCTGACTTGCTTGTGGACCATACTTCCAGGCAACAACAATGTGACACTTCAGGGGCTCAGGTGATACCAGCTTTTGTTTTCCTTTGTGAAAC TAGGAGTAAAAGTGTAGAACCCGCGAGCCCTGATGTCAGTCAGCTCCATCGTGGCATGAGTAGACGCTGCCTTCAGTTTGAAAAAGCTCAACAGAAAACT CCTATGGATGGCACATACTCTCTTGATTTAGCAATCACTATAATTGGTTCAATATCATCTTCTTCCAATACAGAATTGGAGATTTTGGATTCATCTCAGG TGGAGTTACCTAGCTCTTCTAGAAAGAAGCAAACTGTGTTTGTGTCCATGCCATCCGGTTTTGGCTTGCATCTCAATAGCATTGTCAACACTTTGCTAAT AGGATGCACTGGGCACAAAATTAGTTGCTCCAAACTACCCAGTTTAGTTGAAAGAGTCTCTTCAACTGCGGGAGATGATGTGCTCCAAACTAAGGCTTCA CTTGCCACAGGCTCTGCCATTTCCGAGTCTCTTCACACCAAGGAAACTTTAAATAAGTTGCAGCCACCTGAGCATCAGATAACCCTACACAATAATAAGA GATTTAGCTCAGAGCATGCTGACAATTTTGAGGAGTTCAACCAATCAAGCCCCAAGAAGAAAAGGCAAGATCATAAAGTATCAAGCACTGATGGTGATGG TTGCAAACGTTGTAACTGTAAGAAGACTAGATGTTTGAAACGATATTGTGATTGTTTTGCGGCCGGAATCTATTGTGCTGAAACTTGTGCTTGCCAAGGG TGCTTTAACAGACCTGAATACGAGGATACTGTTCTTGAAGCACGTCAACAAAAAGAATCGCATAATCCACTTGCTTTTGCTCCGAAGATTGTACAGCATG TGACTGAGTTTCATGCAATCAATGTGGAAGATGCAAGCCTGTTTACGCCGTCCTCAGGTAGGCATAAGACAGGATGCAATTGCAAAAGGTCAATGTGTGT GAAAAAATATTGTGAATGCTATCAGGCTAATGTTGGATGCTCCAATGCTTGTCGATGTGAAGGGTGCAAAAATATCCATGGTAGGAAAGAAGAATATGGT ATGACTGGAGAAATAGTAAGCAATAGAGCTAATGAAGAAAGGTTAGAAAGTATGGCTGATAACAAATTCAAAATGATTGTAAATAATAAATTTTTACATG CCGAGCTATGTGATCCGCGTAGCCTCACACCATCAACATTGTCATTCGAATACACAAGCCATGGAAAGAAGGCAGCAAAATCCCGACTCCTTCCTGGTAG GTATGTTCTATCATCCGAGCCTGATTTTTCCATGCTGCCACGCAAAATCCACAATAAAACCCTGGACGTGGTTTCCCACAGCCAGGAACTGGATTATAAC ATCACTGAAGCAATGGGACAATTCTCACCACGATTTAATGAACTAGCTGATTTTTCTGATCATACTCCATTGCCAAATCCTTCCCCCATCATGATGGCTT CGTCTTCATCTAAAACGCGGGACACGGCAATTATTTCACAGGTTTGTTTGTATCCTGGAAGTGGTCGTCTCTCATCTAGCGGTTCTCTTCAGTGGCGGAG TTCACCAATTACGCCAATGACTCGGTTAGGTGAGACCAAAACTCAAGCACTGGACTCCGGTTGTGGGCTTTATGACATTCTGGAAGACGGCACACCCGAA ATATTTAAGGAATCTCCTACCCCCGTCACATCTGTTAAAGCAAGTTCTCCTCATAAAAAGGGAGTTTCTCCTCCTCGTGGTCACATCCAAGAGTTTCAAT CGAGCTCTTCAGCAGGCTTGAAAAGTGGGCGCAAGTTCGTATTGAAGTCTGTGCCTTCTTTCCCTCCACTCACTCCCTGTATCGATCCCAAAGATCGCAC CCAACAGAAATACTAG
AA sequence Show only first row Show all	>Potri.018G030000.4 pacid=42801952 polypeptide=Potri.018G030000.4.p locus=Potri.018G030000 ID=Potri.018G030000.4.v4.1 annot-version=v4.1 MDSPKTTTTTTATTTISATTTVSLLDSPPVQESPFSNYVSRLSPIKPVKASHVAQGLLGINSPPLVFTSPRTLSDRQTNFLRRFPCPQISGAEISKNDGG SKKSADGPKDLRKSSTYLNSRLIINVQKSNNINNFEQDQLGSFSGCVDEYLFDPVDVDCADSVNLSSESNLTNSKIVMLESDGIIDMETKGDASQAMPEQ DGEDPKEHSTSETIKEKIEEEGNIVEQPSHVCPNFMSDLLVDHTSRQQQCDTSGAQVIPAFVFLCETRSKSVEPASPDVSQLHRGMSRRCLQFEKAQQKT PMDGTYSLDLAITIIGSISSSSNTELEILDSSQVELPSSSRKKQTVFVSMPSGFGLHLNSIVNTLLIGCTGHKISCSKLPSLVERVSSTAGDDVLQTKAS LATGSAISESLHTKETLNKLQPPEHQITLHNNKRFSSEHADNFEEFNQSSPKKKRQDHKVSSTDGDGCKRCNCKKTRCLKRYCDCFAAGIYCAETCACQG CFNRPEYEDTVLEARQQKESHNPLAFAPKIVQHVTEFHAINVEDASLFTPSSGRHKTGCNCKRSMCVKKYCECYQANVGCSNACRCEGCKNIHGRKEEYG MTGEIVSNRANEERLESMADNKFKMIVNNKFLHAELCDPRSLTPSTLSFEYTSHGKKAAKSRLLPGRYVLSSEPDFSMLPRKIHNKTLDVVSHSQELDYN ITEAMGQFSPRFNELADFSDHTPLPNPSPIMMASSSSKTRDTAIISQVCLYPGSGRLSSSGSLQWRSSPITPMTRLGETKTQALDSGCGLYDILEDGTPE IFKESPTPVTSVKASSPHKKGVSPPRGHIQEFQSSSSAGLKSGRKFVLKSVPSFPPLTPCIDPKDRTQQKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.018G030000 [exp]	0	1
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190701 [exp]	7.34	0.8956
AT5G66840			SAP domain-containing protein ...		Potri.003G069700 [exp]	8.66	0.9029
AT5G27220			Frigida-like protein (.1)		Potri.005G044200 [exp]	9.53	0.8840
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.010G052150 [exp]	9.74	0.8778
AT5G06220			LETM1-like protein (.1.2)		Potri.001G187100 [exp]	9.79	0.8810
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.006G199400 [exp]	12.48	0.8858	CPK20.1
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.003G109800 [exp]	12.64	0.8605
AT1G16170			unknown protein		Potri.001G040300 [exp]	12.64	0.8994
AT1G10417			unknown protein		Potri.008G190600 [exp]	14.14	0.8874
AT5G52800			DNA primases (.1.2.3)		Potri.017G148000 [exp]	16.73	0.8906

Compare expression of checked genes

Potri.018G030000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.