Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20060 372 / 7e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52700 358 / 4e-126 alpha/beta-Hydrolases superfamily protein (.1) AT3G15650 353 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52695 155 / 1e-46 alpha/beta-Hydrolases superfamily protein (.1) AT1G51300 128 / 3e-36 alpha/beta-Hydrolases superfamily protein (.1) AT1G47786 122 / 2e-34 alpha/beta-Hydrolases superfamily protein (.1) AT1G52470 118 / 3e-32 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52460 113 / 3e-30 alpha/beta-Hydrolases superfamily protein (.1) AT1G47780 90 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1) AT1G52440 84 / 1e-19 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251100 [exp] 469 / 6e-170 AT5G20060 370 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.001G173700 [exp] 393 / 9e-140 AT3G15650 389 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G060300 [exp] 387 / 1e-137 AT1G52700 382 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G070700 [exp] 376 / 4e-133 AT5G20060 398 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.011G023000 [exp] 83 / 1e-18 AT4G22300 357 / 1e-125 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008078 [exp] 414 / 2e-148 AT5G20060 362 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10019438 [exp] 369 / 4e-130 AT5G20060 387 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10043294 [exp] 368 / 2e-129 AT5G20060 385 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10026054 [exp] 310 / 7e-107 AT1G52700 337 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10014347 [exp] 301 / 1e-103 AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10002034 [exp] 217 / 4e-69 AT3G15650 239 / 1e-77 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.018G030200.2 pacid=42800455 polypeptide=Potri.018G030200.2.p locus=Potri.018G030200 ID=Potri.018G030200.2.v4.1 annot-version=v4.1 ATGAGCTACAATACCTCTGCTGTAGGTTCTGGCAGCAGGAATACTACAAGAACATTTGAATTTGGAAGAACCCATGTGGTGAGGCCTAAAGGAAAGCACC AGGCCACTATAGTTTGGCTGCACGGTCTTGGTGATAAGGGCTCAAGCTGGTCCCAGCTCTTGGAAACTCTTCCTCTTCCTAATATTAAATGGATATGCCC AACTGCTCCAACCAGGCCAGTAGCAATATTTGGTGGATTTCCATGCACTGCTTGGTTTGATGTGGGGGATATTTCAGAAGACGCCCCTGATGATTTGGAG GGGCTAGAAGCTTCAGCAACACATGTTGCGAATCTTTTATCGACCGAGCCTGCTGATATCAAACTTGGTGTAGGTGGCTTCAGTATGGGTGCTGCAACTG CCCTCTACTCTGCCACATGCCATGTTTTAGGGCAATATGGGAATGGAAACCAGTACCCCATCAACTTAACTGCAGTTGTTGGTCTAAGTGGCTGGCTTCC GTGTTCAAGGACCTTGAGGAGCCGGATAGAAAGATCAGACGAAGCTGCAAGACGTGCAGCATCTTTGCCTATCCTGCTGTGTCATGGCTCGGGTGATGAT GTGGTTGCACATAAACATGGAGAGAAATCAGCGCAGGCATTAAGTTCAGCTGGATTCCGAAATCTTACGTTTAGAAGCTATAATGGGCTTGGTCATTACA CAATCCCTGAAGAGATGGATGAAGTATGTCACTGGCTAACCACTAGGTTAGGGCTCGACGGGTCATGGTCTTGA
AA sequence Show only first row Show all	>Potri.018G030200.2 pacid=42800455 polypeptide=Potri.018G030200.2.p locus=Potri.018G030200 ID=Potri.018G030200.2.v4.1 annot-version=v4.1 MSYNTSAVGSGSRNTTRTFEFGRTHVVRPKGKHQATIVWLHGLGDKGSSWSQLLETLPLPNIKWICPTAPTRPVAIFGGFPCTAWFDVGDISEDAPDDLE GLEASATHVANLLSTEPADIKLGVGGFSMGAATALYSATCHVLGQYGNGNQYPINLTAVVGLSGWLPCSRTLRSRIERSDEAARRAASLPILLCHGSGDD VVAHKHGEKSAQALSSAGFRNLTFRSYNGLGHYTIPEEMDEVCHWLTTRLGLDGSWS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G030200 [exp]	0	1
AT3G22790			Kinase interacting (KIP1-like)...		Potri.008G156200 [exp]	2.44	0.7594
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.007G134500 [exp]	6.63	0.7792	MYB.43
AT4G16400			unknown protein		Potri.006G017900 [exp]	10.00	0.7450
AT1G59940		ARR3	response regulator 3 (.1)		Potri.010G037800 [exp]	10.58	0.6189
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G105600 [exp]	12.40	0.7315
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.002G138900 [exp]	12.64	0.7534
					Potri.014G032100 [exp]	16.06	0.7374
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G027500 [exp]	17.54	0.6931
AT3G14067			Subtilase family protein (.1)		Potri.001G167300 [exp]	20.78	0.6531
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.014G050000 [exp]	22.62	0.7227

Compare expression of checked genes

Potri.018G030200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.