Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32420 284 / 2e-83 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) AT3G63400 220 / 2e-64 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT3G56070 181 / 1e-52 ROC2 rotamase cyclophilin 2 (.1.2) AT2G21130 178 / 1e-51 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 176 / 4e-51 ROC3 rotamase CYP 3 (.1.2) AT4G38740 175 / 1e-50 ROC1 rotamase CYP 1 (.1) AT3G55920 176 / 3e-50 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G15790 180 / 5e-50 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT4G34870 172 / 2e-49 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G29960 172 / 5e-49 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250900 [exp] 389 / 9e-123 AT4G32420 283 / 5e-83 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Potri.002G047200 [exp] 233 / 6e-66 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.005G215800 [exp] 225 / 2e-63 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.004G144300 [exp] 190 / 1e-53 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 188 / 8e-53 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G130100 [exp] 180 / 2e-52 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.019G014396 [exp] 180 / 2e-52 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.009G106200 [exp] 186 / 6e-52 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G135500 [exp] 183 / 3e-51 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013111 [exp] 305 / 4e-91 AT3G63400 288 / 5e-85 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10008079 [exp] 287 / 2e-84 AT4G32420 263 / 2e-75 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Lus10024831 [exp] 228 / 2e-64 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 225 / 3e-63 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10022012 [exp] 182 / 3e-53 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 182 / 5e-53 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10017258 [exp] 179 / 7e-52 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10012059 [exp] 184 / 2e-51 AT2G15790 596 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10020992 [exp] 184 / 3e-51 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10027924 [exp] 181 / 9e-51 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.018G030300.2 pacid=42801738 polypeptide=Potri.018G030300.2.p locus=Potri.018G030300 ID=Potri.018G030300.2.v4.1 annot-version=v4.1 ATGGAGAAGAAAACAGCGAAGAAGAAGAACCCGTTGGTTTTTATGGACGTGTGTATTGATGGCGATCCTAAGGAGAGAATGGTTTTTGAGCTTTTCTCGG ATATTGCTCCCAAGACTGCAGAAAATTTCCGTGCTCTTTGTACAGGGGAGAAAGGAATTGGTCCCAAATCTGAAAGACCATTGCACTACAAGGGATCCTT TTTCCATCGCATCGTTAAAGGGTCCATGGCTCAGGGTGGTGATATTCTGAAACGAGATGGGACCTTTGGAGAGAGCATATATGGGGACAAGTTTCCTGAT GAGTCTCCAAAGCTAAAACATGATGGACCTGGTCTTCTATCCATGTCAATTGCTGATCGTGACGCTTTAGGTTCTCAATTTATTGTTACCTTTAGGGCTA ATCATCATCTGGACAGGAAGTATGTGGTCTTTGGGAAGCTTGTGCAAGGAGATAAAGTACTGAAGAATATTGAAGATGTGGGTGATGAAGAAGGGAGACC CACTGTAACAGTGAAAATAGTCAATTGTGGTGAATTCATTGAGGACAAAAAGAAAGTAAATAAACTGAAAACAGAAAAGCACCAGAAATCTTCTAGAGAC AGAAAGAAGAGGAGGAAGAGAAACCATTTGTCTGATTCAGAGAATTCATCTGATTCTGATATGGAATCATCGGAATCTGACAGTGATTCTGACTCTATGT CCTCATCATCTGATATTAGTTCTTCGAGTGAGGACAGACGTAGGAAGAGAAAGAGAACTTCTAAACGAGATAAACATAGACGTGGCAAAAAACGAGATAA GCGACGTGACAAAAGGAGAAAGAGACATGATAAACGATCCAAGCGTAGATCAAGAAGATCATCAGATAGTCTAACAGATGCTGAGAGTGAGAGTGAAACC AGCTCTGATGATGATGCTCAAGCAAAAGAGAGGAAGTGCAGGGGCCCTTCTCAGAAAACTGCTGAGGATCAATCTCCTATGGTTTTGGAGGAAGAAGCTG CCTCCTTTCCTCGTAAAAGGAGACAGGAACCTGATATACTTGAAAAGGAAGATGGTGAATTCCCCAAGGAAAATGGATCACGACGAAGTGATGGTATTGA GGCAGATGCTAAATCTTTTGGAAGTGAAGATAGGCAACCTGATATCAGAGATGGTCACCCAGGAAAATCTAGGAGCCAAAGTATGAGTCCCAAGAGGACC TCAGGTAAGAGTATTAGTCCCAGGAGGAGCCTGAGCAAGAGCCCGAGTGTTAGTCCAAAGAGAAGCAGTAGCAGGAGTCACAGTGCTAGTAGAAGCCATC CTCATGTCTCCCAGAGGAGTATCAGCAGAAGTCCTGTTAGAAGTGGAAGCAGCAGGAGCACAGCTAGAAGTTTCAGCAGAAGTCCTGTGAGGGCAAAGAA GGCTAGAAGCATAAGCACTAGCCCAGTGAGATCTCGGTCTCGAAGAAGCATTAGCAGGAGCCCTGTGAGATTACCACCTCGAAGAAGCATAAGCAGGAGC CCTGTGAGATCTCGGTCTCAATCATTGCAAAAATCTATCAGCAGAAGCCCTGTAAGAGATTCTAGGAGCATAAGCAGAAGCCCTGTTAGATCTTCTCGGA GAAGCATAAGCAGAAGCCCAGTTAGATCTTCTCGGAGAAGTGTAAGCAGAAGCCCTGTTCGATCTTCTCGAAGAAGCGTTAGCAGAAGTCCAGTTAGATC TTTGAGGAGAAGTGTTAGTAAAAGCCCAGTTAGATCTTCCCGGAGAAGCATCAGCAGAAGCCCTGTTAGATCTTCTCGGAGAAGCATCAGTAGAAGCTCT GGTAGGGCTCCTTCAAGGAGAAGCATCAGCAGAAGCCCAGTTAGGGCACCAAGCAGGAATAATCGTCGCAGCTACTCAAGGAGCCCAAGCATACGGAAGG CAAGGTCTCCTGATCGAAGAAGTTTGTCAAGAAGTGTTTCCCCTAATGGGTCCCCGAAGCGTATCAGGAGGGGAAGGGGTTTCAGTCAACGATATGCTTA TGCTCGGAGATACAGAACCCCCTCTCCAGAGCGTTCTCCCGTGAGATCCTACCGTTATAGCGGCCGTGATAGATTTACCAGTTACCGAAGGTATTCTCCT AGGCGTTATAGAAGTCCTCAAAGAGGAAGAACTCCACCAAGATACAGAGGGAGGAGAAGCAGGACACGTAGCCCATCTGTATCACGCAGCCCCCGCTATC GCAACCGTCGTTATAGCCGCAGCCCTGTTCGCAGTCGTTCCCCAGTTGACGTGTCCAAGTCACGTGTGTCTCCACGAGTTGATAGGAGAAGGTCGCCGTC TCGTAGCCGTAGCCTATCAAAATCACAATCCTCTTTGGACTCCCAGTCTCCCAAGCGACTCAGTAAAGACAGATCAAGGTCATCATCTAGAAGCCCTGGT GGGAAGAAGGGCCTGGTGTCGTATGATGATGGTTCTCCCGATTCCAGCCAAAGGTGA
AA sequence Show only first row Show all	>Potri.018G030300.2 pacid=42801738 polypeptide=Potri.018G030300.2.p locus=Potri.018G030300 ID=Potri.018G030300.2.v4.1 annot-version=v4.1 MEKKTAKKKNPLVFMDVCIDGDPKERMVFELFSDIAPKTAENFRALCTGEKGIGPKSERPLHYKGSFFHRIVKGSMAQGGDILKRDGTFGESIYGDKFPD ESPKLKHDGPGLLSMSIADRDALGSQFIVTFRANHHLDRKYVVFGKLVQGDKVLKNIEDVGDEEGRPTVTVKIVNCGEFIEDKKKVNKLKTEKHQKSSRD RKKRRKRNHLSDSENSSDSDMESSESDSDSDSMSSSSDISSSSEDRRRKRKRTSKRDKHRRGKKRDKRRDKRRKRHDKRSKRRSRRSSDSLTDAESESET SSDDDAQAKERKCRGPSQKTAEDQSPMVLEEEAASFPRKRRQEPDILEKEDGEFPKENGSRRSDGIEADAKSFGSEDRQPDIRDGHPGKSRSQSMSPKRT SGKSISPRRSLSKSPSVSPKRSSSRSHSASRSHPHVSQRSISRSPVRSGSSRSTARSFSRSPVRAKKARSISTSPVRSRSRRSISRSPVRLPPRRSISRS PVRSRSQSLQKSISRSPVRDSRSISRSPVRSSRRSISRSPVRSSRRSVSRSPVRSSRRSVSRSPVRSLRRSVSKSPVRSSRRSISRSPVRSSRRSISRSS GRAPSRRSISRSPVRAPSRNNRRSYSRSPSIRKARSPDRRSLSRSVSPNGSPKRIRRGRGFSQRYAYARRYRTPSPERSPVRSYRYSGRDRFTSYRRYSP RRYRSPQRGRTPPRYRGRRSRTRSPSVSRSPRYRNRRYSRSPVRSRSPVDVSKSRVSPRVDRRRSPSRSRSLSKSQSSLDSQSPKRLSKDRSRSSSRSPG GKKGLVSYDDGSPDSSQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32420			Cyclophilin-like peptidyl-prol...		Potri.018G030300 [exp]	0	1
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.005G021400 [exp]	4.35	0.7259
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	10.00	0.7154
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	11.48	0.7171
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.002G203700 [exp]	12.00	0.7173
AT4G35890			winged-helix DNA-binding trans...		Potri.007G063600 [exp]	13.41	0.6627
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.001G417400 [exp]	13.49	0.6635
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G187766 [exp]	15.49	0.6794
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.006G044100 [exp]	15.81	0.7011	Pt-NAP57.2
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.010G246500 [exp]	18.52	0.6838
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.010G014600 [exp]	20.71	0.6687

Compare expression of checked genes

Potri.018G030300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.