Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) AT2G25590 139 / 3e-37 Plant Tudor-like protein (.1) AT5G20030 130 / 2e-34 Plant Tudor-like RNA-binding protein (.1) AT1G26540 56 / 3e-08 Agenet domain-containing protein (.1) AT1G09320 52 / 5e-07 agenet domain-containing protein (.1) AT2G44440 49 / 4e-06 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT2G47230 48 / 1e-05 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT3G12140 47 / 1e-05 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT1G06340 44 / 2e-05 Plant Tudor-like protein (.1) AT3G06520 45 / 6e-05 agenet domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250600 [exp] 696 / 0 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.001G173900 [exp] 249 / 8e-79 AT4G32440 208 / 2e-63 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.005G216200 [exp] 166 / 3e-47 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.002G046800 [exp] 100 / 8e-23 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.013G006900 [exp] 52 / 3e-07 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.005G011100 [exp] 52 / 4e-07 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.016G047600 [exp] 51 / 6e-07 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 51 / 7e-07 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 47 / 2e-05 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014715 [exp] 96 / 7e-22 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10018749 [exp] 95 / 1e-21 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10003091 [exp] 95 / 2e-21 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10024835 [exp] 95 / 2e-21 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10000615 [exp] 66 / 2e-11 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000353 [exp] 66 / 3e-11 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10031223 [exp] 52 / 8e-07 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 52 / 8e-07 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 50 / 3e-06 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10037805 [exp] 48 / 1e-05 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [poplar] [flax] ENT ENT domain CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.018G030500.1 pacid=42800782 polypeptide=Potri.018G030501.1.p locus=Potri.018G030500 ID=Potri.018G030500.1.v4.1 annot-version=v4.1 ATGCAAGACATCGGCGAATTTGGGGATATCATGAAGTTCAAGAAAGGAAGTAGAGTGGAGGTGTTAAGAAAAACACACTTGTCGTCATGTGCATGGCGGT GTGGTGAGATTATCTCGGGGAATGGACAAACTTATTGGGTTAGGTATGATGGTTTGTGGGGTTTGAGTAATGAGGATGATGTGGAGAGTGTGTCAAGAGA GGTAATTAGGCCCTGCCCTCCACCTGCGGATGTTTCAGATGGTTGGGCTGTTGGTGATTTGGTGGAGGTGTTCAATAATCTTTGTTGGAAAACTGCAGCA GTTATGAAGGTCATGAGGAGAAATCGTTGCTTGGTTAGGCTAATCGGGTCTTCAACAGAACTTCGAGTTGACAAAGTTAACATTAGGATGCGCCAATTAT GGCAAGATGGCAGATGGGTTGAAATTGGAAAGGGTTCTGGCAGTTTTGAAAATGAGAAGTTGAATAAACCATCAGTTTTCAGTTGTTATCAGAAGAAGAG GTCTCTAATGCAGCAAGCCAGTAAGAAGAGGAAAGTGCAAGCAAGAGAAACTTGTTTAGCTATTGAGCACAACTTTGGTTTCCAGGAGTCTTGTGCTATG TCAGCTAGAACATCCAAGAGGGCATCCCCATTTTGGGCAACTCACTTTGAATCATGTAATGAAAAAGTTGACAAAATGAGAGCGATTGAGAAACAGAGTG AGGGCCGGCGAGTGATATCAGGGTACCCATCCTCATTCCTGACAAAGGTAGATGCTGTTGCTTACCCACGAGAGTGTCTGGGTGAAATATACATGCATGG TTCCTCTAACAATCAAACAATTGGATCTTGTGAAATGGAGAGGCGAACACCAAATAATTTTGTCAATTCTTTTTGTGGAAGAAGCTCAGAATCTAATGAT TCTGATAGTGATGCATGCTCCGTTGGTAGTTGTAGTGTTAATAGTGATAGTCCAGACAGACTGTTTAATTGTGTTGTAGCTGGGAATAGTCCTGATGCAG ATACCCTTAGTAGTGATGCTGAATCTTTTTATGGCCATGGAGACAAGGAAGAAAATTGTTCCCTCCCCTTAGGAGAGGATGTTACAGTAAGAATCCATAG TTTAGAGTTGCATGCTTATCGTTGCACTCTAGGCGTGTTTTATGCTTCCGGGCCCTTAAGTTGGGAACAAGAAGCATTGTTGACAAATCTCCGTATCTCA CTTAACATTTCAAACGATGAACATCTGATGGAGCTAAGGAACTTAATTTCTGCTGGAACAAGCATTCATATTTGTTAA
AA sequence Show only first row Show all	>Potri.018G030500.1 pacid=42800782 polypeptide=Potri.018G030501.1.p locus=Potri.018G030500 ID=Potri.018G030500.1.v4.1 annot-version=v4.1 MQDIGEFGDIMKFKKGSRVEVLRKTHLSSCAWRCGEIISGNGQTYWVRYDGLWGLSNEDDVESVSREVIRPCPPPADVSDGWAVGDLVEVFNNLCWKTAA VMKVMRRNRCLVRLIGSSTELRVDKVNIRMRQLWQDGRWVEIGKGSGSFENEKLNKPSVFSCYQKKRSLMQQASKKRKVQARETCLAIEHNFGFQESCAM SARTSKRASPFWATHFESCNEKVDKMRAIEKQSEGRRVISGYPSSFLTKVDAVAYPRECLGEIYMHGSSNNQTIGSCEMERRTPNNFVNSFCGRSSESND SDSDACSVGSCSVNSDSPDRLFNCVVAGNSPDADTLSSDAESFYGHGDKEENCSLPLGEDVTVRIHSLELHAYRCTLGVFYASGPLSWEQEALLTNLRIS LNISNDEHLMELRNLISAGTSIHIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.018G030500 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G013800 [exp]	1.73	0.8185
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.008G064800 [exp]	3.46	0.7954
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	4.00	0.7752
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.004G100700 [exp]	4.69	0.7559
					Potri.007G026200 [exp]	5.47	0.7591
AT5G10320			unknown protein		Potri.005G073600 [exp]	6.48	0.7431
AT4G32190			Myosin heavy chain-related pro...		Potri.006G255800 [exp]	6.92	0.7549
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Potri.015G080400 [exp]	9.48	0.7541
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	10.58	0.7618
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	12.84	0.7707

Compare expression of checked genes

Potri.018G030500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.