Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11420 600 / 0 Protein of unknown function, DUF642 (.1) AT5G25460 588 / 0 Protein of unknown function, DUF642 (.1) AT4G32460 567 / 0 Protein of unknown function, DUF642 (.1.2) AT1G80240 469 / 2e-165 Protein of unknown function, DUF642 (.1) AT3G08030 410 / 5e-142 Protein of unknown function, DUF642 (.1.2) AT2G41800 395 / 4e-136 Protein of unknown function, DUF642 (.1) AT2G41810 393 / 2e-135 Protein of unknown function, DUF642 (.1) AT2G34510 351 / 3e-118 Protein of unknown function, DUF642 (.1) AT1G29980 343 / 1e-115 Protein of unknown function, DUF642 (.1.2) AT5G14150 155 / 7e-43 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250100 [exp] 686 / 0 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 521 / 0 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 510 / 0 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 429 / 2e-149 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 425 / 4e-148 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 414 / 1e-143 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 412 / 5e-143 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 398 / 3e-137 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 350 / 2e-118 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013112 [exp] 611 / 0 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 607 / 0 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 588 / 0 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10025753 [exp] 434 / 2e-151 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10035910 [exp] 432 / 6e-150 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 424 / 1e-147 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 421 / 3e-146 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 401 / 2e-138 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 390 / 5e-134 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 376 / 1e-128 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF04862 [poplar] [flax] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Potri.018G031100.2 pacid=42801448 polypeptide=Potri.018G031100.2.p locus=Potri.018G031100 ID=Potri.018G031100.2.v4.1 annot-version=v4.1 ATGCCAAGTGAAGATGCATGCCATCATGATGTCAGTCTTGCTATTTCTTTCAAATCCAAGGGCTTTTTTGCCTCACGGCATGCATATAAGCTCATGCTCT CTCCCTCCTTCGCACTACATGCCTTCTCCTCCTCCTCCTCCTCCTCCTCTCTGTCTTTCCCTTGGACAAGAAATTGTAAAGGACTTGAAATGAGAGGAGC CGCCGTGTTGTTGTCGGTGCTGCTGTTTGCCACTAATTGCCACTTTGCCTTCTCTTTCATAGAAGGGCTAGTAGAGAATGGCAACTTCGAGCTTAGCCCG AAGCAATCGGATATGAAAGGAACACAGATGATCGGACGCTATGCATTACCAAAATGGGAGATTTCAGGCTTCGTGGAGTACATCAAAGCAGGCCAGAAAC AAGGGGACATGTTGCTAGTAGTGCCAGAAGGAGCCTATGCAATAAGGCTTGGAAATGAGGCATCAATTAAGCAAAGACTGAATCTTACAAAGGGAATGTA CTATTCCATCACATTTAGTGCAGCTAGAACTTGCGCTCAAGAGGAAACATTGAACATTTCGGTTTCTCCTGAATGGGGTGTGTTGCCAATGCAGACAATG TATAGTAGCAATGGATGGGACTCGTATGCTTGGGCATTTAAAGCCTTGATCAGTCCTGTTGAGTTTGTTATTCACAATCCTGGAGTTGAAGAAGATCCTG CTTGCGGTCCACTTATTGATTCAGTGGCATTTACATCCTTATATCCTCCTAGACCAACAAATAAGAACATACTGAAAAATGGGGGTTTCGAAGAAGGTCC ATATGTGTTTCCTAACACGACCTGGGGTGTCCTAATCCCACCCAACATTGAAGATAAGCACTCTCCACTCCCTGGCTGGATGGTTGAATCCCTTAAAGCT GTTAAATACATAGATGTAGAACACTTTTCAGTGCCTCAAGGACGACGTGCCGTAGAACTTGTAGCAGGCAAAGAAAGCGCCATTGCACAAGTAGCCCGTA CCGTAATCGGCAAAACCTATACCCTCTCATTCGCAGTAGGAGATGCCAGCAATTCATGTGAAGGGTCAATGGTTGTCGAGGCGTTTGCCGGCAAGGACAC ACTCAAAGTTCCTTATGAATCTAAGGGAAAAGGTGGATTTAAGCGTGCTGTGCTCAAGTTTGTTGCTGTTTCTACTAGAACAAGAATAATGTTCTATAGC ACATTTTACACCATGAGGAGTGATGACTTCTCTTCTCTTTGTGGACCTGTTATTGATGATATCAAGCTGTTGAGTCTCCGTGGAACATGA
AA sequence Show only first row Show all	>Potri.018G031100.2 pacid=42801448 polypeptide=Potri.018G031100.2.p locus=Potri.018G031100 ID=Potri.018G031100.2.v4.1 annot-version=v4.1 MPSEDACHHDVSLAISFKSKGFFASRHAYKLMLSPSFALHAFSSSSSSSSLSFPWTRNCKGLEMRGAAVLLSVLLFATNCHFAFSFIEGLVENGNFELSP KQSDMKGTQMIGRYALPKWEISGFVEYIKAGQKQGDMLLVVPEGAYAIRLGNEASIKQRLNLTKGMYYSITFSAARTCAQEETLNISVSPEWGVLPMQTM YSSNGWDSYAWAFKALISPVEFVIHNPGVEEDPACGPLIDSVAFTSLYPPRPTNKNILKNGGFEEGPYVFPNTTWGVLIPPNIEDKHSPLPGWMVESLKA VKYIDVEHFSVPQGRRAVELVAGKESAIAQVARTVIGKTYTLSFAVGDASNSCEGSMVVEAFAGKDTLKVPYESKGKGGFKRAVLKFVAVSTRTRIMFYS TFYTMRSDDFSSLCGPVIDDIKLLSLRGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11420			Protein of unknown function, D...		Potri.018G031100 [exp]	0	1
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.013G079500 [exp]	1.00	0.9685
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Potri.001G092200 [exp]	4.12	0.9505
AT2G18969			unknown protein		Potri.018G090200 [exp]	11.31	0.9666
AT5G39240			unknown protein		Potri.004G119600 [exp]	12.48	0.9618
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G109700 [exp]	15.16	0.9603
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.014G160200 [exp]	16.24	0.9611
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	17.54	0.9165
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	18.97	0.9083
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Potri.016G090500 [exp]	20.09	0.8577
AT3G22800			Leucine-rich repeat (LRR) fami...		Potri.010G083100 [exp]	20.63	0.9601

Compare expression of checked genes

Potri.018G031100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.