Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25600 1079 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT2G26650 1071 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G32500 1056 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G46240 556 / 0 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G22200 556 / 0 AKT3, AKT2/3 potassium transport 2/3 (.1) AT4G18290 545 / 0 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 419 / 5e-136 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT3G02850 377 / 2e-117 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 370 / 1e-114 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G03430 67 / 5e-12 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G249900 [exp] 1515 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G071400 [exp] 1130 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G154600 [exp] 832 / 0 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.004G132200 [exp] 594 / 0 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.003G018800 [exp] 587 / 0 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.006G245000 [exp] 478 / 3e-158 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 456 / 1e-149 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 439 / 9e-144 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.017G135400 [exp] 376 / 1e-116 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002529 [exp] 1139 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10013115 [exp] 1134 / 0 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10019442 [exp] 1111 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 1105 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 1097 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10008082 [exp] 1066 / 0 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017766 [exp] 613 / 0 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019944 [exp] 583 / 0 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10042831 [exp] 577 / 0 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10015474 [exp] 572 / 0 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein CL0030 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.018G031600.1 pacid=42801897 polypeptide=Potri.018G031600.1.p locus=Potri.018G031600 ID=Potri.018G031600.1.v4.1 annot-version=v4.1 ATGACGAAGAAGAGGGTGTTGTTCTGTGGACAAGGGGGGCTGGAAAATGGAAGCCTTTACGGAAGTGAACAAGGGAATAATGGAATACGTGACAAAGAAC ATGATGAATTATCAGGAGACGATGCCAGCCATTTTAGCCTTACCGGTGAGATTCTCCCTTCTCTAGGTGCCACCGCTCGTAGCAACCGCCGTGTCATTCT CCGTCGCTACATTCTCTCTCCCTTCGCCCCTAACTACAGATTATGGGATACTTTCTTGGTGTTTCTAGTTTTCTACACGGCATGGGTGTCTCCGTTTGAG TTTGGTTACCTTAGCAAACCTAGTGGGGGTCTGGCCATAACAGATAATGTTGTCAATGGATTTTTTGCCATTGATATTGTTTTGACCTTCTTTGTTGCAT ACCTTGACAAAAGTTCATATCTACTAGTTGATAACCGAAAAAAGATTGCTTGGAGGTATACAAAATCGTGGTTGGTCCTTGATGTTATCTCCACAATCCC ATCTGAGCTTATCAGGGAAATATTGCCTGATAAACTTCAGTCATACGGGTACTTTAGTATGCTTCGCCTCTGGCGTCTCCGGCGAGTTAGTAAATTCTTT TCAAGATTGGAAAAGGATAGGAACTACAATTACTTTGTGGTTCGATGCGTGAAGCTCATATGTGTTACTCTATTTGTAGTTCACATGGCCGGTTGCTTCT ACTATCGCATTGCTGTAAATTACAAGGATCCAAGTAAAACATGGATCGGATCCGTTTGGGAAGATTTTCATGGAGAGAGCCTGTGGATTCGTTATGTCAA ATCACTTTACTGGTCTACAACCACGCTCTCTACCACTGGATATGGTGATTTGCATGCTGTCAATCCGCAGGAGATGATATTCGTCATGTTCTACATGATG TTTAATCTTGGACTGACATCGTATTTGATTGGAAACATGACCAATTTGGTTGTCCATGCCACCTTCCGAACAAGGCAATTTAGAGATACTATCCAAGCTG TCTCAAGTTTTGCACAAAGGAACCGCCTTCCGATTCGGTTACAAGAACAGATGCTTGCTCATTTGTGTTTGAAGTACAGAACCGACTCGGAGGGATTGCA TCAACAAGAGACCATTGGTTCTCTTCCTAAAGCAATTCGATCGAGCATTTCTAACTATCTCTTTTATTCACTTGTGGATAAAGTGTACTTGTTTCGTGGG GTATCAAATGACCTGCTCTTTCAGTTGGTCACAGAGATGAAAGCTGAGTACTTTCCACCCAGAGAAGATGTAATTTTGCAAAATGAAGCACCAACAGATC TGTATATTTTAGTCACTGGCGCGGTGGAACTTATCGTGCACAGGAATGGAATAGAGCAGGTTGTTGGTGAGGCTGCAACTGGAGATGTTATTGGTGAGAT TGGTCTGCTATGTTACAGACCACAGTTATTCACGGTTCGAACCAAACGGTTGAGTCAGCTCCTACGTTTGAATCGAACTGCGTTCTTAAATAATGTCCAA TCAAATGTTGGAGATGGGACAGTAATCATGAACAACCTTCTTCAGCATTTGAAAGAGCTGAATGATCCAGAGATGGAAGGAATTTTGCACCACACAGAGC ACATGCTGAATCAGGACAGAATGGATTTACCTCTTACTTTGTGCATCGCAGCAATGAGGGGTGATGATCTATTGTTGCATCAGTTGCTGAAGCAGGGTTC AGATCCAAATGAGTCGGACGAAAATGGACGAACTGCGCTGCATATTGCAGCTTCAAATGGGAATGAGCACTGTGTAGTCCTACTTCTGGAGTATGGAGTG GATCCTAACATCAAAGATTCAGAGGGCAATGTTCCTCTATGGGAAGCGCTACAGGGGAATCATAAATCTGTATTTAAACTTCTTTCAGACAATGGGGCAA CTATAACTTCTGGTGATGTGGGCCAATTTGCATATACAGCTGCTGAGCAAAATAACTTGGATTTGCTCAAGGAAATTGTCAAATATGGTGGAGATGTAAC ACTGCCTGCAAGGTGTGGAACTACTGCCATTCATACAGCAATCTCTGAAGGAAACACTGAAATGGTCAAGTTCATCTTAGACCAAGGAGCCGATGTTGAT AAGCCAGATCTCCATGGATGGACACCAAGGGCCTTGGCTGATCATCAGGGCCAAGAGGAAATTCAAGCTTTGTTCGAAAATAGGATGCAGACGAATAAAA AAACGGTTTCCACAATCCCAAAGCATCCAGGGGTGCCATTTGGTAGGAAGCCCATGGCAAGGTATAATAGTGAACCAACAATACCTCCATTTTCTCCTTC TTTTCGTCATGATGTTATGCCACCAGTCCCTGAAGTCTCATGGCCTGATAGACCTCGAAGGAGAAGGGCAGATAATTTCCACAACTCTCTTGTTGGGATG ATGTCAGTTGCTAGTACTGGTGAGAATGACATAATTTCATCTCCAGCCCGTTTTACTGGCTTCGCAAGTTTGAACTGTCGTGCTAGAGTGACTCTCAGTT GCCCGGATAAAGGTGAAGTTGCTGGAAAGATTGTTGCTTTACCAAATTCACTCCAAGAACTACTTGATATTGGTTCCAAAAAATTTGGGTGCAATGCCTC CAAGATTCTAACCAAGGAAGGTGCTGAAATTGAAGATATAGAGGTACTTAGAGATGGCGATCATCTTGTTCTTGTTAGTGATGCTGGCACTTAA
AA sequence Show only first row Show all	>Potri.018G031600.1 pacid=42801897 polypeptide=Potri.018G031600.1.p locus=Potri.018G031600 ID=Potri.018G031600.1.v4.1 annot-version=v4.1 MTKKRVLFCGQGGLENGSLYGSEQGNNGIRDKEHDELSGDDASHFSLTGEILPSLGATARSNRRVILRRYILSPFAPNYRLWDTFLVFLVFYTAWVSPFE FGYLSKPSGGLAITDNVVNGFFAIDIVLTFFVAYLDKSSYLLVDNRKKIAWRYTKSWLVLDVISTIPSELIREILPDKLQSYGYFSMLRLWRLRRVSKFF SRLEKDRNYNYFVVRCVKLICVTLFVVHMAGCFYYRIAVNYKDPSKTWIGSVWEDFHGESLWIRYVKSLYWSTTTLSTTGYGDLHAVNPQEMIFVMFYMM FNLGLTSYLIGNMTNLVVHATFRTRQFRDTIQAVSSFAQRNRLPIRLQEQMLAHLCLKYRTDSEGLHQQETIGSLPKAIRSSISNYLFYSLVDKVYLFRG VSNDLLFQLVTEMKAEYFPPREDVILQNEAPTDLYILVTGAVELIVHRNGIEQVVGEAATGDVIGEIGLLCYRPQLFTVRTKRLSQLLRLNRTAFLNNVQ SNVGDGTVIMNNLLQHLKELNDPEMEGILHHTEHMLNQDRMDLPLTLCIAAMRGDDLLLHQLLKQGSDPNESDENGRTALHIAASNGNEHCVVLLLEYGV DPNIKDSEGNVPLWEALQGNHKSVFKLLSDNGATITSGDVGQFAYTAAEQNNLDLLKEIVKYGGDVTLPARCGTTAIHTAISEGNTEMVKFILDQGADVD KPDLHGWTPRALADHQGQEEIQALFENRMQTNKKTVSTIPKHPGVPFGRKPMARYNSEPTIPPFSPSFRHDVMPPVPEVSWPDRPRRRRADNFHNSLVGM MSVASTGENDIISSPARFTGFASLNCRARVTLSCPDKGEVAGKIVALPNSLQELLDIGSKKFGCNASKILTKEGAEIEDIEVLRDGDHLVLVSDAGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Potri.018G031600 [exp]	0	1
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029900 [exp]	1.00	0.9652	DHQD3
AT5G66600			Protein of unknown function, D...		Potri.004G150000 [exp]	4.12	0.9110
AT3G21690			MATE efflux family protein (.1...		Potri.004G016400 [exp]	6.32	0.9293
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	6.48	0.9387
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Potri.013G134400 [exp]	6.63	0.9288
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.001G453000 [exp]	7.21	0.9239
AT5G14090			unknown protein		Potri.001G327500 [exp]	7.54	0.8882
AT3G50180			Plant protein of unknown funct...		Potri.006G042873 [exp]	7.93	0.9489
					Potri.010G076350 [exp]	8.71	0.9466
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.010G246800 [exp]	10.24	0.9168

Compare expression of checked genes

Potri.018G031600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.