Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11330 568 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G67030 59 / 2e-09 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248800 [exp] 588 / 0 AT5G11330 427 / 4e-149 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Potri.005G138400 [exp] 63 / 2e-10 AT5G67030 925 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.007G044300 [exp] 62 / 5e-10 AT5G67030 919 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.001G229100 [exp] 52 / 6e-07 AT5G67030 477 / 9e-164 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.001G152600 [exp] 46 / 3e-05 AT2G35660 658 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) Potri.019G003700 [exp] 45 / 9e-05 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008089 [exp] 492 / 5e-174 AT5G11330 483 / 1e-170 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10013121 [exp] 340 / 1e-115 AT5G11330 369 / 1e-127 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10013122 [exp] 107 / 2e-28 AT5G11330 87 / 6e-22 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10033366 [exp] 51 / 8e-07 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10000593 [exp] 51 / 1e-06 AT2G35660 639 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) Lus10019342 [exp] 50 / 2e-06 AT5G67030 852 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10011001 [exp] 48 / 9e-06 AT2G35660 451 / 8e-164 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) Lus10009359 [exp] 48 / 1e-05 AT5G67030 888 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10034816 [exp] 43 / 0.0005 AT5G05320 284 / 7e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01494 [poplar] [flax] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G032500.1 pacid=42801439 polypeptide=Potri.018G032500.1.p locus=Potri.018G032500 ID=Potri.018G032500.1.v4.1 annot-version=v4.1 ATGGGAGAGAAGAAGAAAGCCAAGGCAGTAATAGTAGGAGGGAGCATAGCAGGGGTGTCATGTGCACATGCCCTCATTTCAGCTGGATGGGATGTTGTGG TGCTTGAGAAATCAAGCCAACCTCCTAAAGGGAGCCCTACCGGTGCCGGCCTCGCACTTGACAGGCAGGCTTTTAACATTATTGAGTCCTGGCTACCCCA GCCTCAGCTTCTCCAACAGACCACCTTGCCTCTAACAATTGATCAGAATCAAACAGCAGATGGAGAAAAGGAAGTCAGTAGGATATTAACAAGAGATGAG GATTTCAATTTCAGAGCTGCACACTGGGCAGATCTTCATGGTCTTCTGTACAATGCACTACCAGCAGAAGTATTTTTGTGGGGTCATTTGTACCTTTCTT TCAGGACTTCTGAAGACAAAACCTCTGTTACAGTTGAGGCTAAAGTTCTTCAAACTGAAGAGATTATTGAGATAAATGGGGACTTGCTTGTTGCAGCAGA TGGATGCCTCTCTTTAATCCGAAAGACTTTTCTACCTGACCTGAAATTGAGGTATTCAGGTTACTGTGCTTGGAGAGGAGTTCTTGATTTTTCAGGAAAT GAGAATTCAGAAACTATAATGAGCATCCAAAGAGTGTACCCCGATCTTGGAAAATGCTTATACTTTGATCTGAACACTGGAAGCCACACTGTGCTTTATG AACTTCTTAGCAAAAGGCTCAACTGGATTTGGTATGTTCATCAACCTGAGCCTGAACAGAAGGGATACTCAGTGACCATGAAAGTAAGCAGTGATATGAT AGAGAATATGTATCAAGAAGCAGAGAAAGCTTGGGGTCCTGAATTGGTGAGAGTCATGAGAGAAACAAAGGAGCCTTTCATAAATATCATATATGATTGT GGTCCTCTTGAGCGAATCTTTCTGGACAACGTGGTATTAATCGGAGATGCTGCTCACCCTACAACTCCTCATGGCGTCAGAAGCACAAACATGTCGATAT TGGATGCAGCGGTTCTAGGAAAATGTATTGAGAAGTGGGGAGCAGAAAATATACCTTCAGCTCTTGAGGAATATCAGCGCATTCGACTACCAGTCACTTC TAAACAAGTCCTACACTCACGCAGAATGGGTCGAATCAAGCAAGGCTTAGCTCTTCTTGATCGCAAGCCTTTTGATCCGAAGACAGCAAGTGCAGAGGAA TGTGAAGAGCTTCAGCAGAAAAACATGCCTTTCTTTGCTACTGTTCCTTTGTCAGTTGATTGA
AA sequence Show only first row Show all	>Potri.018G032500.1 pacid=42801439 polypeptide=Potri.018G032500.1.p locus=Potri.018G032500 ID=Potri.018G032500.1.v4.1 annot-version=v4.1 MGEKKKAKAVIVGGSIAGVSCAHALISAGWDVVVLEKSSQPPKGSPTGAGLALDRQAFNIIESWLPQPQLLQQTTLPLTIDQNQTADGEKEVSRILTRDE DFNFRAAHWADLHGLLYNALPAEVFLWGHLYLSFRTSEDKTSVTVEAKVLQTEEIIEINGDLLVAADGCLSLIRKTFLPDLKLRYSGYCAWRGVLDFSGN ENSETIMSIQRVYPDLGKCLYFDLNTGSHTVLYELLSKRLNWIWYVHQPEPEQKGYSVTMKVSSDMIENMYQEAEKAWGPELVRVMRETKEPFINIIYDC GPLERIFLDNVVLIGDAAHPTTPHGVRSTNMSILDAAVLGKCIEKWGAENIPSALEEYQRIRLPVTSKQVLHSRRMGRIKQGLALLDRKPFDPKTASAEE CEELQQKNMPFFATVPLSVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.018G032500 [exp]	0	1
AT2G32480		ARASP	ARABIDOPSIS SERIN PROTEASE (.1...		Potri.002G228600 [exp]	2.23	0.9576
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032733 [exp]	4.00	0.9532
AT3G19900			unknown protein		Potri.010G169700 [exp]	4.58	0.9529
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Potri.017G032766 [exp]	6.00	0.9488
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004300 [exp]	6.48	0.9452
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	6.70	0.9507
AT2G43750		CPACS1, ATCS-B,...	CHLOROPLAST O-ACETYLSERINE SUL...		Potri.013G127800 [exp]	6.70	0.9441
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.006G267300 [exp]	8.36	0.9434
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	11.66	0.9517
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Potri.005G084200 [exp]	12.00	0.9261

Compare expression of checked genes

Potri.018G032500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.