Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25610 249 / 8e-86 ATPase, F0/V0 complex, subunit C protein (.1) AT4G32530 249 / 1e-85 ATPase, F0/V0 complex, subunit C protein (.1.2) AT1G19910 61 / 4e-12 AVA-2PE, ATVHA-C2, AVA-P2 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) AT4G34720 61 / 4e-12 ATVHA-C1, AVA-P1 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1) AT4G38920 61 / 4e-12 AVA-P3, ATVHA-C3 vacuolar-type H\(+\)-ATPase C3, vacuolar-type H\(+\)-ATPase C3, vacuolar-type H(+)-ATPase C3 (.1) AT2G16510 61 / 4e-12 AVA-P1 ATPase, F0/V0 complex, subunit C protein (.1) AT1G75630 61 / 4e-12 AVA-P4, AVA-P vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4, vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (.1), vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248700 [exp] 262 / 6e-91 AT4G32530 281 / 3e-98 ATPase, F0/V0 complex, subunit C protein (.1.2) Potri.005G235300 [exp] 61 / 4e-12 AT1G19910 225 / 2e-76 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.002G027200 [exp] 61 / 4e-12 AT1G19910 226 / 9e-77 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.004G163400 [exp] 61 / 4e-12 AT4G34720 224 / 4e-76 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1) Potri.007G014600 [exp] 61 / 4e-12 AT1G19910 224 / 5e-76 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.002G082700 [exp] 61 / 6e-12 AT1G19910 221 / 9e-75 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.009G125000 [exp] 61 / 7e-12 AT4G34720 226 / 4e-76 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000347 [exp] 257 / 1e-88 AT4G32530 312 / 3e-110 ATPase, F0/V0 complex, subunit C protein (.1.2) Lus10000694 [exp] 257 / 1e-88 AT4G32530 312 / 3e-110 ATPase, F0/V0 complex, subunit C protein (.1.2) Lus10033179 [exp] 61 / 5e-12 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10028367 [exp] 61 / 5e-12 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10028370 [exp] 61 / 5e-12 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10041819 [exp] 61 / 5e-12 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010618 [exp] 61 / 5e-12 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010623 [exp] 61 / 5e-12 AT1G19910 315 / 6e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010619 [exp] 61 / 9e-12 AT1G19910 315 / 5e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00137 [poplar] [flax] ATP-synt_C ATP synthase subunit C
Representative CDS sequence Show only first row Show all	>Potri.018G032600.1 pacid=42802036 polypeptide=Potri.018G032600.1.p locus=Potri.018G032600 ID=Potri.018G032600.1.v4.1 annot-version=v4.1 ATGTCAAGCTCATGGTCGCAAGCACTCGTTAAGATCTCTCCTTACACTTTTTCCGCCGTCGGAATCGCCGTCGCCATCGGTGTTTCCGTCCTCGGCGCTG CCTGGGGGATTTATATAACTGGGAGTAGTTTAATTGGTGCTGCAATCAAGGCTCCTCGCATTACCTCTAAGAATCTCATCAGTGTGATTTTTTGTGAGGC TGTTGCAATATATGGTGTTATTGTAGCAATTATTCTACAAACAAAGTTAGAGAGTGTTCCAGCTTCACAGATTTATGCCCCTGAGTCTCTTAGAGCTGGA TATGCAATTTTTGCCTCTGGGATTATCGTGGGCTTTGCAAACCTTGTCTGCGGATTGTGCGTGGGTATAATTGGAAGCAGCTGTGCTCTGTCTGATGCTC AAAACTCTTCACTTTTTGTGAAGATTCTGGTGATTGAGATCTTTGGTAGTGCACTCGGGTTGTTTGGAGTGATTGTTGGAATTATTATGTCAGCCCAAGC AACCTGGCCTGCAAAATAA
AA sequence Show only first row Show all	>Potri.018G032600.1 pacid=42802036 polypeptide=Potri.018G032600.1.p locus=Potri.018G032600 ID=Potri.018G032600.1.v4.1 annot-version=v4.1 MSSSWSQALVKISPYTFSAVGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYAPESLRAG YAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25610			ATPase, F0/V0 complex, subunit...		Potri.018G032600 [exp]	0	1
AT4G34720		ATVHA-C1, AVA-P...	VACUOLAR H+-PUMPING ATPASE C1,...		Potri.004G163400 [exp]	3.00	0.9059	AVAP5.1
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.014G044000 [exp]	3.60	0.9118
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	4.00	0.9049
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Potri.014G066800 [exp]	5.83	0.9117	GOS12.1
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.001G317400 [exp]	5.91	0.8975
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.006G171500 [exp]	6.92	0.8972
AT3G53850			Uncharacterised protein family...		Potri.010G198700 [exp]	9.48	0.8535
AT1G49140			Complex I subunit NDUFS6 (.1)		Potri.015G054700 [exp]	9.94	0.8625
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.004G194400 [exp]	12.04	0.8682
AT4G29340		PRF4	profilin 4 (.1)		Potri.018G057600 [exp]	12.40	0.8728	PRO1.3

Compare expression of checked genes

Potri.018G032600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.