Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29250 437 / 4e-151 HXXXD-type acyl-transferase family protein (.1) AT4G13840 116 / 2e-28 HXXXD-type acyl-transferase family protein (.1) AT3G23840 99 / 2e-22 HXXXD-type acyl-transferase family protein (.1) AT2G19070 91 / 1e-19 SHT spermidine hydroxycinnamoyl transferase (.1) AT4G24510 87 / 2e-18 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT5G02890 82 / 5e-17 HXXXD-type acyl-transferase family protein (.1) AT5G48930 81 / 2e-16 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 79 / 8e-16 HXXXD-type acyl-transferase family protein (.1) AT3G26040 77 / 6e-15 HXXXD-type acyl-transferase family protein (.1) AT1G31490 75 / 2e-14 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039700 [exp] 242 / 5e-75 AT4G29250 218 / 2e-65 HXXXD-type acyl-transferase family protein (.1) Potri.005G052200 [exp] 234 / 3e-72 AT4G29250 207 / 9e-62 HXXXD-type acyl-transferase family protein (.1) Potri.001G319200 [exp] 122 / 2e-30 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.005G153600 [exp] 110 / 2e-26 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.018G104700 [exp] 102 / 2e-23 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 94 / 1e-20 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 93 / 2e-20 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 92 / 8e-20 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 89 / 6e-19 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028335 [exp] 471 / 4e-164 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10041782 [exp] 466 / 4e-162 AT4G29250 348 / 8e-116 HXXXD-type acyl-transferase family protein (.1) Lus10016638 [exp] 134 / 2e-34 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1) Lus10005439 [exp] 91 / 1e-19 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2) Lus10026123 [exp] 91 / 2e-19 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 89 / 6e-19 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 89 / 8e-19 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10035190 [exp] 84 / 5e-17 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10005358 [exp] 82 / 1e-16 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10021395 [exp] 79 / 1e-15 AT5G48930 219 / 1e-66 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.018G032700.2 pacid=42800629 polypeptide=Potri.018G032700.2.p locus=Potri.018G032700 ID=Potri.018G032700.2.v4.1 annot-version=v4.1 ATGGCTGATATCACCTACATTTGCAAACGCACTGTTGTTAGCACAAAACCAGTGCAACCAGGAAAACACTGCTCGCTTTCAGTTTTAGATCGCCTTATGG AACAAAACCACCTAAGATCTGTGTACTATTTTCGAACCCCAGGAGGGAGGGAGCCTGGAGAATTAACCAAGAAGCTAAGAGAGTCTCTGTCTGAAATGCT TACATGTTTTCCTATAGTGACAGGCAGGCTGTTGAAGGACCCGAAAGGTCATTGGTTGATCAAGTGCAATGATGCTGGCGTAAGAATGGTGGAGGCTAGA ATAAAAGGAAGTGTTGAAGACTGGTTAAAGAGTGTAGATAGAGAGAAGGAGCTTATGCTTGTTCACTGGGAAGAAATGTACCATAAGCCTTATTTTTGGT CTACCTTCTATGTTCAGATAACTGAATTTGGCGAAGGTGGACTAGCAATTGGCTTGAGCTGCTTTCACCTGCTAGCTGATCCCACTTGTGCCACCATGTT CGTTAAGGCCTGGGCCGACGTGACACTCACCGGGAAAATGCTCAACCCTCCTCTTTTCCATCAGCTGCCGCCTCGAAGACCTGGCAGGAAGAATCCCAAC CACGAGCCTTACATGGAGTTGATCAATTGCTATAAACCTATTGCTGATAAAACAAATTTGGTATCTGACACAAAGCATGCGACTATTGCTCTTGCATTTT CGGACCCTATGGTCCGAGCTTGCATGGCAAATGGTCAAGCCATGAACGCATTCGATCAGTCTAGCCCGTCACCATTCGAGGCACTGGCCGGGTTATTTTG GGTTTGTATAAGCAAATTGAAAGGAGCAGGAGACGGTCTTATAGACATGTCTATATGTTTAGACATGAGAAATGTGCTGCACCTGGATAATGGATTTTTC GGAAACTGCATGGTATATAACAAAGTTAACTCAAAGTCCTTAAAAGAACACAAGTTATCGGATGTTGCTAAGGCAATCGGAGAAGTCATGGCAAAAATGG ACAATGATGGGATCACTGACTTGATCGAATGGCTTGAACATAATGATTATCAATCTCCTCCTCCGATGAATGGCTGTGAACTCATGTGTGCTAGCTTGGA AGCCGTGGACCCCTATTTAGCTGTGTTTGAAGAAGGATTTGTCCCAATTCGTGTGTCCTCCTATGTGGAACCAGTTGTGGGGGCAGGACATGTTTTGGTC CTTCCATCGCCGCCGTGCGAGGGTCCATTGAGCAGGACAGTCATGGTTACACTCCCAGAAGATGAGGCGGCTAGACTATGTGAAGATGATCTCATTCTGC ATTTCTCTCCTACTATTTTAATGGGGGTGAATAATTAA
AA sequence Show only first row Show all	>Potri.018G032700.2 pacid=42800629 polypeptide=Potri.018G032700.2.p locus=Potri.018G032700 ID=Potri.018G032700.2.v4.1 annot-version=v4.1 MADITYICKRTVVSTKPVQPGKHCSLSVLDRLMEQNHLRSVYYFRTPGGREPGELTKKLRESLSEMLTCFPIVTGRLLKDPKGHWLIKCNDAGVRMVEAR IKGSVEDWLKSVDREKELMLVHWEEMYHKPYFWSTFYVQITEFGEGGLAIGLSCFHLLADPTCATMFVKAWADVTLTGKMLNPPLFHQLPPRRPGRKNPN HEPYMELINCYKPIADKTNLVSDTKHATIALAFSDPMVRACMANGQAMNAFDQSSPSPFEALAGLFWVCISKLKGAGDGLIDMSICLDMRNVLHLDNGFF GNCMVYNKVNSKSLKEHKLSDVAKAIGEVMAKMDNDGITDLIEWLEHNDYQSPPPMNGCELMCASLEAVDPYLAVFEEGFVPIRVSSYVEPVVGAGHVLV LPSPPCEGPLSRTVMVTLPEDEAARLCEDDLILHFSPTILMGVNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	0	1
					Potri.006G047250 [exp]	2.00	0.9213
AT3G42880			Leucine-rich repeat protein ki...		Potri.001G166300 [exp]	3.60	0.6943
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.007G073000 [exp]	3.74	0.7938
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.006G023801 [exp]	4.89	0.7031
AT5G55690	MADS		MADS-box transcription factor ...		Potri.001G214900 [exp]	5.83	0.6757
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.004G043600 [exp]	6.00	0.8167
					Potri.006G070200 [exp]	6.63	0.6537
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.007G070250 [exp]	11.83	0.6840
AT1G57775			Protein of unknown function (D...		Potri.004G110875 [exp]	12.00	0.6517
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.002G092800 [exp]	12.24	0.6827

Compare expression of checked genes

Potri.018G032700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.