Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11320 546 / 0 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 541 / 0 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G04180 471 / 3e-165 YUC9 YUCCA 9 (.1) AT1G04610 464 / 2e-162 YUC3 YUCCA 3 (.1) AT4G13260 458 / 1e-160 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT4G28720 454 / 8e-159 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT2G33230 452 / 6e-158 YUC7 YUCCA 7 (.1) AT5G43890 451 / 1e-157 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT5G25620 433 / 2e-150 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT1G21430 323 / 7e-108 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248200 [exp] 686 / 0 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 477 / 9e-168 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 473 / 2e-166 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.018G036800 [exp] 467 / 9e-164 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.010G062400 [exp] 456 / 5e-158 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.008G174600 [exp] 451 / 3e-157 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.007G028200 [exp] 447 / 5e-156 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.016G003300 [exp] 337 / 1e-113 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1) Potri.005G186100 [exp] 325 / 8e-109 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013125 [exp] 591 / 0 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 587 / 0 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10035244 [exp] 465 / 5e-163 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023695 [exp] 461 / 4e-161 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10022851 [exp] 456 / 1e-159 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 451 / 9e-158 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 447 / 4e-156 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 446 / 1e-155 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10024023 [exp] 432 / 2e-150 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10041729 [exp] 429 / 9e-149 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00743 [poplar] [flax] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Potri.018G033200.1 pacid=42801195 polypeptide=Potri.018G033200.1.p locus=Potri.018G033200 ID=Potri.018G033200.1.v4.1 annot-version=v4.1 ATGGCTTCTGGTAAAGAACAAGAGCAACAAGGGTTTACACAAGCAAAGTGTGTTAAGGTTCATGGACCTATCATTGTAGGTGCGGGACCATCTGGCTTAG CCGCTGCTGCCTGCCTTTCTCAACAAGGAGTCCCTTCTCTAATTCTTGAAAAGAGTGACTGCATAGCTTCTCTTTGGCAACAAAGAACCTATGACCGCTT AAAACTTCACCTTCCTAAACAGTTCTGTGAACTCCCGCTTCTTGGTTTCCCTGCTAATTTCCCCAAGTACCCTACCAAGAGCCAATTCATTTCTTACATG GAGTCTTATGCTTCTCATTTCAATATCCATCCTAAATTCAACCAGGCTGTAAAAAAGGCAGAATATGACCGCGTTAAAGGGATTTGGAGGGTGCAAACTG AACACCTTGAGTACCATTCTAGATGGCTTATTGCTGCTACTGGTGAGAATGCTGAGCCTGTAATACCTGAAATAGCTGGTTGTGGCAAGTTTAAAGGTGC TATTCTACATACAAGTGAGTACAATTCTGGTTCTAAGTTCAAGAACCAAAGGGTCTTGGTCATTGGGTGTGGCAATTCAGGGATGGAAGTTAGCTTAGAC CTCTGTAGACACAATGCGATCCCTCATATGGTTGTAAGAAATACAGTGCATGTTCTTCCTCGAGAGATGTTTGGCATGTCAACATTCGGAGTAGCCATGG CACTTCTAAAGTGGTTACCCTTGAGATTAGTGGACAAGTTGCTACTTCTAGGAGCCAATCTCACCTTGGGCAACACAGACCAATTAGGCCTGAAGCGACC AAAAACAGGCCCCATTGAGCTAAAGAATGTCACTGGAAAGACACCAGTGTTGGATGTTGGTGCATTATCACAGATTAAGTCTGGCAAAATCAAGGTGATG GAAGGTGTGAAGGAGATAACAAAAAATGGAGTCAAATTTATGGATGGACAAGAAAGGGAGTTTGAGTCTATAATCTTAGCAACTGGGTACAAAAGCAATG TCCCTACTTGGCTCAAGGGATGTGATTTCTTCACAAAAGATGGCATGCCCAAAACCCCCTTTCCTAAGGGCTGGAAAGGAGGAAATGGACTGTACACGGT TGGCTTCACAAGAAGAGGCCTGTTAGGAACTGCCTCGGATGCAGTAAAAATTGCTCATGACATAGCTGGTGAATGGAAGGCAGCCAAGGATAGTATTAGA TCTTGTAATTCCCATGTTATCATACACTTAGATCATGATGGGGCCAAATAA
AA sequence Show only first row Show all	>Potri.018G033200.1 pacid=42801195 polypeptide=Potri.018G033200.1.p locus=Potri.018G033200 ID=Potri.018G033200.1.v4.1 annot-version=v4.1 MASGKEQEQQGFTQAKCVKVHGPIIVGAGPSGLAAAACLSQQGVPSLILEKSDCIASLWQQRTYDRLKLHLPKQFCELPLLGFPANFPKYPTKSQFISYM ESYASHFNIHPKFNQAVKKAEYDRVKGIWRVQTEHLEYHSRWLIAATGENAEPVIPEIAGCGKFKGAILHTSEYNSGSKFKNQRVLVIGCGNSGMEVSLD LCRHNAIPHMVVRNTVHVLPREMFGMSTFGVAMALLKWLPLRLVDKLLLLGANLTLGNTDQLGLKRPKTGPIELKNVTGKTPVLDVGALSQIKSGKIKVM EGVKEITKNGVKFMDGQEREFESIILATGYKSNVPTWLKGCDFFTKDGMPKTPFPKGWKGGNGLYTVGFTRRGLLGTASDAVKIAHDIAGEWKAAKDSIR SCNSHVIIHLDHDGAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.018G033200 [exp]	0	1
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.002G184500 [exp]	3.16	0.9728
AT3G52610			unknown protein		Potri.016G078000 [exp]	8.77	0.9763
AT2G27550		ATC	centroradialis (.1)		Potri.004G203900 [exp]	14.42	0.8988	TFL1.2
AT2G12646			PLATZ transcription factor fam...		Potri.010G107600 [exp]	18.81	0.9698
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447700 [exp]	21.21	0.9607
AT3G60510			ATP-dependent caseinolytic (Cl...		Potri.001G156900 [exp]	22.09	0.9697
AT4G24380			unknown protein		Potri.006G027000 [exp]	23.49	0.9423
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Potri.004G051900 [exp]	25.29	0.9697
AT5G35110			unknown protein		Potri.018G113901 [exp]	26.15	0.9692
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447900 [exp]	26.73	0.9401

Compare expression of checked genes

Potri.018G033200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.