Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32551 657 / 0 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT2G32700 421 / 2e-133 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT2G41500 105 / 3e-23 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 96 / 5e-21 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 86 / 4e-17 MAC3B MOS4-associated complex 3B (.1.2.3) AT3G49660 83 / 7e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 86 / 1e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 80 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 82 / 2e-15 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 81 / 3e-15 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248100 [exp] 1135 / 0 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.001G049400 [exp] 452 / 9e-146 AT2G32700 1057 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.003G178600 [exp] 452 / 2e-145 AT2G32700 1051 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G241800 [exp] 408 / 8e-129 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.004G045601 [exp] 328 / 5e-100 AT2G32700 354 / 1e-111 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G051900 [exp] 100 / 7e-23 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 104 / 8e-23 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.019G087200 [exp] 85 / 3e-17 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 87 / 5e-17 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017754 [exp] 669 / 0 AT4G32551 778 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10033066 [exp] 655 / 0 AT4G32551 746 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10043135 [exp] 427 / 3e-136 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10032614 [exp] 426 / 1e-135 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10022797 [exp] 387 / 2e-121 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10011863 [exp] 383 / 3e-118 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10021059 [exp] 110 / 1e-24 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 108 / 3e-24 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 105 / 3e-24 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 105 / 3e-24 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0561 [poplar] [flax] LisH PF08513 [poplar] [flax] LisH LisH
Representative CDS sequence Show only first row Show all	>Potri.018G033300.5 pacid=42801754 polypeptide=Potri.018G033300.5.p locus=Potri.018G033300 ID=Potri.018G033300.5.v4.1 annot-version=v4.1 ATGTCTCAAACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATCCATGATTATTTGGTAAAAAGAGACTTGAAGGCTTCTGCTCAGGCTTTTCAAG CTGAAGGAAAAGTGTCATCTGATCCTGTAGCTATCGATGCACCGGGAGGCTTTCTCTTTGAATGGTGGTCAGTGTTCTGGGATATATTCATTGCAAGGAC CAATGAGAAGCACTCAGAGGTTGCTGCGTCTTACATTGAGACTCAGTTGATTAAAGCAAGGGAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAAGGT CAACAACCACAACCACAACCACAACATCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGC AGCAACAACAACAGCAAATGCAAATGCAACATCTCATATTGCAGAGGCATGCTCAGCAGCAGCAGCAGCAGCAGCAACACCAACAACAACACCAGCAGCA GCAGCAGCAGCAGCAGCATCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCATCAGCAACAGCAGCAGCATCAGCAACAGCAGCAGCAGCAACAGCAG CATCAGCAGCATCAACAGCAGCAGAGAAGGGATGGTGCCCACCTCCTAAATGGTACTACAAATGGGCTTGTGGGAAATGATCCTCTCATGCGCCAAAATG CTGCAACTGCTAATGCAATGGCTACTAAGATGTATGAGGAAAAATTAAAATTACCAATGGAGAGGGATTCTTTGGCAGATGCTGCAATGAAGCAAAGATT TGGTGAGAATGTAGGGCATCTTTTGGATCGAAATCATGCCTCGATTTTGAAATCTGCTGCTGCAGCAACTGGCCAGACTTCAGAGCAAGTGTTGCATGGT GCTTCCGGTGCAATGTCCCCACAGGTCCAGGCTCGAAATCAGCAATTGCCAGGGTCCACACCAGACATAAAGAGTGAGATCAATCCAGTGCTGAATCCTA GAGCTGCTGGTCCAGAAGGATCATTGATAGGAATTCATGGATCAAATCAAGGTGGTAACAATTTGACTTTAAAAGGATGGCCACTCACTGGATTGGAGCA ACTTCGTTCAGGGCTTCTTCAGCAACAAAAGCCTTTTATACAGGCTCCTCAGCCCTTTCATCAACTTCAGATGTTAACACCACAACACCAGCAACAGCTA ATGCTTGCACAACAAAGTTTAACATCACCAGCTGCTAGTGATGAAAGTAGAAGGCTGAGAATGTTTATCAATAACCCGACTATGAGCCTTGGAAAGGATG GCCTTACAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCCCCTTTGCAAACTGTGGGCCCACTTTTTTCTCGTGGAGAAACAGATATGCGGATGAA GATAAAAATGGCTCTGTTACAGCAGCATCAGCATCAGCATCAGCAACCGCAACAGCAACAACAACAGAGCAGCAATCCACAGCAACAGCAGCAGCAGCAG CAACAGCTTCAGCAGCACGTGCTTTCAAATCAGCAATCACAGAGTTCAAGTCACAATCTTCACCCGCAAGATAAGATGGGGGGTGCTGCCAGTGTCAACG TCGACGGTAGCATGTCCAACTCTTTTCGAGGAAACGATCAGGTTTCAAAAAACCAGAGTGGGAGAAAGAGAAAACAACCAGTGTCATCTTCTGGTCCTGC CAATAGCTCAGGAACTGCAAATACAGCAGGACCCTCCCCAAGTTCAGCTCCTTCAACGCCTTCTACCCACACACCTGGAGATGTGATCTCAATGCCTGCT TTGCCTCATGGTGGAGGTTCTTCTAAGCCTTTTATGTTTGGGGCAGATGGTACGGGCACCCTTACATCACCATCGAATCAATTGTGGGATGACAAAGATC TTGAATTGCAGGCTGATATGGATCGTTTTGTGGAGGATGGATCTCTTGAGGACAATGTCGATTCTTTTTTATCCCCTGATGATAATGACCCTAGAGATGT GGTTCCTCGTATGGATGTGAGCAAAGGATTCACATTTACTGAAGTAAATTCTGTTAGAGCAAGTGCAAGTAAAGTAGTCTGTTGCCATTTCTCATCAGAC GGGAAATTGCTTGCTAGTGGCGGCCATGATAAAAGGGCTGTATTGTGGTACACAGATAATTTAAAGCTAAAAGCTACCCTTGAAGAACATACATCTCTGA TTACTGACGTCCGTTTCAGCCCAAGCATGCCACGTCTTGCAACATCATCATCTGACAAAACTGTTAGGGTTTGGGATGCTGACAATCCTAATTTCTCACT CCGCACTTTTACTGGACATTCTTCCAATGTAATGTCACTAGACTTCCACCCAACTAAAGATGATCTTATATGCTCTTGTGATGGGGTTGGTGAAATAAGA TACTGGAGTATTACCAATGGTAGCTGTACAAGAGTATTCAAGGGTGATATGGCCCGGATGAGATTTCAACCCCGTGCAGGGAAGTATCTTGCTGCTGCTG CTGAGAATGTTGTGTCTATACTGGATGTTGAGACACAAGCTTGTCGGCATTCGTTACAGGGTCATACTAAAGCAATCCATTCTGTTTGTTGGGATCCTTC TGGTGAGTATCTAGCGTCTGTCAGTGAGGACTCTGTCAGAGTCTGGACGCTTGGATCAGGAAGTGAGGGTGAATGTGTTCATGAGTTGAGTTGTAATGGC AACGAATTCCACTCCTGTGTTTTTCACCCTACATTCCCTTCATTGCTCGTCATTGGCTGTTACCAGTCTTTGGAGCTTTGGAACATGAGTGAGAACAAGA CAATGACTCTGGCAGCCCATGATGGTCAAATTGCTGCATTGGCTGTATCAACTGTTACAGGGATGCTTGCATCTGCTAGTCATGATAAGTTTGTCAAACT GTGGAAATGA
AA sequence Show only first row Show all	>Potri.018G033300.5 pacid=42801754 polypeptide=Potri.018G033300.5.p locus=Potri.018G033300 ID=Potri.018G033300.5.v4.1 annot-version=v4.1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQG QQPQPQPQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQMQMQHLILQRHAQQQQQQQQHQQQHQQQQQQQQHQQQQQQQQQQQHQQQQQHQQQQQQQQQ HQQHQQQQRRDGAHLLNGTTNGLVGNDPLMRQNAATANAMATKMYEEKLKLPMERDSLADAAMKQRFGENVGHLLDRNHASILKSAAAATGQTSEQVLHG ASGAMSPQVQARNQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGIHGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFIQAPQPFHQLQMLTPQHQQQL MLAQQSLTSPAASDESRRLRMFINNPTMSLGKDGLTNSVGDVVPNVGSPLQTVGPLFSRGETDMRMKIKMALLQQHQHQHQQPQQQQQQSSNPQQQQQQQ QQLQQHVLSNQQSQSSSHNLHPQDKMGGAASVNVDGSMSNSFRGNDQVSKNQSGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPA LPHGGGSSKPFMFGADGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLEDNVDSFLSPDDNDPRDVVPRMDVSKGFTFTEVNSVRASASKVVCCHFSSD GKLLASGGHDKRAVLWYTDNLKLKATLEEHTSLITDVRFSPSMPRLATSSSDKTVRVWDADNPNFSLRTFTGHSSNVMSLDFHPTKDDLICSCDGVGEIR YWSITNGSCTRVFKGDMARMRFQPRAGKYLAAAAENVVSILDVETQACRHSLQGHTKAIHSVCWDPSGEYLASVSEDSVRVWTLGSGSEGECVHELSCNG NEFHSCVFHPTFPSLLVIGCYQSLELWNMSENKTMTLAAHDGQIAALAVSTVTGMLASASHDKFVKLWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.018G033300 [exp]	0	1
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.006G015900 [exp]	1.73	0.8106
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.005G149701 [exp]	2.00	0.8250
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	6.48	0.8298
AT2G47310			flowering time control protein...		Potri.002G192900 [exp]	16.73	0.7952	FCA.3
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	21.81	0.7977
AT4G34280			transducin family protein / WD...		Potri.001G297600 [exp]	21.93	0.7431
					Potri.001G247100 [exp]	22.95	0.7726
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	23.36	0.7915
AT5G05800			unknown protein		Potri.010G076000 [exp]	25.29	0.7516
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	28.61	0.7768

Compare expression of checked genes

Potri.018G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.