Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA3ox4,Pt-WGA3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15550 328 / 3e-111 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G80340 301 / 8e-101 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT4G21690 298 / 8e-100 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT1G80330 288 / 1e-95 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT3G21420 168 / 4e-49 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 166 / 3e-48 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 165 / 7e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 164 / 1e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 161 / 1e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 160 / 2e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247700 [exp] 583 / 0 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.003G057400 [exp] 359 / 3e-123 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G176600 [exp] 358 / 4e-123 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G355200 [exp] 169 / 3e-49 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.001G381700 [exp] 168 / 3e-49 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.009G022800 [exp] 166 / 2e-48 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.019G014454 [exp] 166 / 2e-48 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.001G382400 [exp] 165 / 5e-48 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G007100 [exp] 165 / 5e-48 AT1G55290 496 / 4e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008100 [exp] 350 / 5e-120 AT4G21690 273 / 8e-90 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013135 [exp] 342 / 4e-117 AT1G15550 263 / 4e-86 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10011476 [exp] 338 / 3e-115 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10013134 [exp] 311 / 2e-104 AT4G21690 242 / 3e-77 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10008099 [exp] 194 / 4e-60 AT4G21690 137 / 3e-38 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10030995 [exp] 179 / 2e-53 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10013137 [exp] 162 / 7e-49 AT4G21690 140 / 1e-40 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10022292 [exp] 165 / 6e-48 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10032930 [exp] 164 / 8e-48 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015252 [exp] 164 / 2e-47 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.018G033600.1 pacid=42800339 polypeptide=Potri.018G033600.1.p locus=Potri.018G033600 ID=Potri.018G033600.1.v4.1 annot-version=v4.1 ATGAGCGCTCTTTCTGAAGCCTACAGAGACCATCCTCTCCATCTCCACCATATTATACCCCTAGACTTCGATTCGGTTCGGACCGTGCCCGACTCACATG TATGGCCTACATCCCATGCCTTCGAGTCTGATGACCAATTATCGATACCCACGGTCGATCTCATGGATCCCGATGCGGTGAAACTTGTAGGGCATGCTTG TGAGACATGGGGTGTGTTCCAAGTCATAAACCATGGCATTCCATTGGACATAATAGATGAAGTTGAGTCCGAGGCTAGAAGACTCTTCTCTCTCCCGACA GGACATAAATTGAAGGCCTTAAGGTCTCCTGGCGGAGCCACCGGCTATGGCTTAGCTCGGATTTCGCCATTCTTCAGCAAGAAAATGTGGCATGAAGGGT TTACAGTCATGGGTTCTCCTGTCGATCATGCTAGGGAACTTTGGCCCAATGACTACCAGCGGTTTTGTGATGTAATGGAAGATTATCAGAAGAAAATGAA GGAGCTAGCCATAACCCTAATGCATCTGATCCTCAAGTCCTTGGACTTGTCTGAAGAAGAAATATCCAAGGTTGTTTCACCTGGAGGTGCCAGCACTGCT TTACAGCTGAACTCCTATCCATTCTGTCCTGATCCAAGTCGAGTCATGGGTCTAGCTCCTCACACAGACACCTCCCTCTTGACAATACTGTATCAAAGTA CAATAAATGGCTTAGAAATCTTCAAAGATGGAGTTGGTTGGGTTTTAGTATCTCCTACAAATGGATCACTTGTAGTAAATGTTGGTGATCTCTTGCACAT TCTCTCAAATGCTCAGTTCCCGAGCGTTCTTCATCGTGTGGTTTTAAAAGAGAAACAACAAAGACTGTCCCTGGCTTACTTTTACAGCCCTCCTACTGAT TTCCATGTCTCTCCTCTGGCTTTGAATCCTGCCCAAATTCCTCTATATCGTTCTGTGTCGGTGAGAGAATACATTCACATCAAGGCGAAGAATGTTGAGA AAGCACTTTCTTTGATTAGAATTTAG
AA sequence Show only first row Show all	>Potri.018G033600.1 pacid=42800339 polypeptide=Potri.018G033600.1.p locus=Potri.018G033600 ID=Potri.018G033600.1.v4.1 annot-version=v4.1 MSALSEAYRDHPLHLHHIIPLDFDSVRTVPDSHVWPTSHAFESDDQLSIPTVDLMDPDAVKLVGHACETWGVFQVINHGIPLDIIDEVESEARRLFSLPT GHKLKALRSPGGATGYGLARISPFFSKKMWHEGFTVMGSPVDHARELWPNDYQRFCDVMEDYQKKMKELAITLMHLILKSLDLSEEEISKVVSPGGASTA LQLNSYPFCPDPSRVMGLAPHTDTSLLTILYQSTINGLEIFKDGVGWVLVSPTNGSLVVNVGDLLHILSNAQFPSVLHRVVLKEKQQRLSLAYFYSPPTD FHVSPLALNPAQIPLYRSVSVREYIHIKAKNVEKALSLIRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Potri.018G033600 [exp]	0	1	GA3ox4,Pt-WGA3.2
					Potri.010G137500 [exp]	14.76	0.9054
					Potri.001G276804 [exp]	23.30	0.9753
					Potri.001G330250 [exp]	26.90	0.9753
AT5G62490		ATHVA22B	ARABIDOPSIS THALIANA HVA22 HOM...		Potri.014G148600 [exp]	31.24	0.8708
					Potri.001G466250 [exp]	32.95	0.9753
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G058850 [exp]	34.11	0.9325
AT4G33230			Plant invertase/pectin methyle...		Potri.003G021300 [exp]	44.72	0.9243
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160200 [exp]	46.60	0.9753
					Potri.005G134725 [exp]	48.50	0.9753
					Potri.005G145702 [exp]	50.33	0.9753

Compare expression of checked genes

Potri.018G033600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.