Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32570 191 / 8e-57 ZIM TIFY8 TIFY domain protein 8 (.1) AT3G17860 50 / 2e-06 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G70700 43 / 0.0002 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G48500 43 / 0.0003 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247500 [exp] 578 / 0 AT4G32570 187 / 3e-55 TIFY domain protein 8 (.1) Potri.015G035800 [exp] 49 / 6e-06 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.012G044900 [exp] 49 / 6e-06 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 45 / 6e-05 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 45 / 6e-05 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.002G048500 [exp] 43 / 0.0004 AT4G14720 95 / 6e-22 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.005G214300 [exp] 42 / 0.0008 AT4G14720 153 / 1e-43 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008101 [exp] 271 / 6e-87 AT4G32570 155 / 2e-43 TIFY domain protein 8 (.1) Lus10013138 [exp] 265 / 7e-85 AT4G32570 152 / 2e-42 TIFY domain protein 8 (.1) Lus10031907 [exp] 48 / 2e-05 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Lus10039911 [exp] 44 / 0.0002 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10027648 [exp] 44 / 0.0002 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10013166 [exp] 43 / 0.0002 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10031333 [exp] 42 / 0.0006 AT3G17860 155 / 8e-44 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10014700 [exp] 42 / 0.001 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [poplar] [flax] tify tify domain
Representative CDS sequence Show only first row Show all	>Potri.018G033700.1 pacid=42800773 polypeptide=Potri.018G033700.1.p locus=Potri.018G033700 ID=Potri.018G033700.1.v4.1 annot-version=v4.1 ATGGCTATGGTCATGACAATGGTACAACAAAGCAAAAACAACAATGCCAACTCTGGCCATAGTAATAGTGTTAATATAAACAACAGCACTGCAACAAGCC AACAGCAACAAAAACAACAAGTGAAGGCAATGTTTCATGATTTCTTAGGCATGAAAGCAACTACAGATTCACCAGTCGTTTTAGCTCCAAAATATAAAGA TGGGTCTCCTTCTGCTTCTGCTTCACTTGGGGCTTCTTCTGGTGGTGGCCGCGGACCTCTCTCTTCCACCTCTGATCTAGCTTCTGAAAGGCAGGCTGGG AATCATCTTGAGGGGATTCCATTTTACGGCCCAAGGAGTGATATTTCTGGTCCTGAGATAAGCAACAGATTAGCTGGAAGTAAGCGGAGCAATTCCGATT CTGCCTTTACGGGACCAAGGGATGGGGTTCCACAAATGGCTCATGATTCCACTGAGAGCCTGCATTTGATGAAGATGCTCAAAAATGGAGGTGGTGGAGA GTGGTCTAGAAGGTCTAATGATGATGAGGTTTTCTATGGCATGCAGTCAAAGAGGCCGAGTTCTGCATCTCTCTCACTGCAACCTTCTGCTGGCAATAGA CTTGATGCCAATGTTTCCAAATGGGAGCGATCCATTCCCATGGGAGTAGGCGCATATCCTACTCGTGGTGGCCAATTTGTTCCTTTTACTCATCAAATTC CCACAAACAGATTCAGAGATACTAATGCTGGTCCTTCAGTTATCTCTCAATCTGCTGCTGATGAAGGTTCCAGAACTGGAATTAAAGGCCCCGGTATTCT GAGTTCTATAAATGCTGGCAGCGGTATTTCTGAGAAAAATTCATCTGGAGGGCTGTCTAGTGGCGGCAAACCAAAGATTGGGATTCATATTTCAGAGCCA GAATCTTCAACTCCTGCAAGTCAGAAGGGTTTAACATCTGCCAGTCGCCAGATGACTATATTTTATGGTGGTCAAGCTCATGTTTTTGATGATGTCCACC CAAACAAGGCGGATGTTATAATGTCCCTAGCTGGTTCGAACGGAGGATCATGGTCAACAACCTACTCACCAAAACCTACTGCAAGGCAGGGCAGCGAAAG TTTCATGACCAGCAATGAATATGAAGGAGCTGTGGCCGCTAACACACCATTCCCACATGAATTTCGCGGGAGGACATTTGTCACTGGCAATGCTACTCAT GCAGTCGGCTCTGGTGATCGAATCTCTACACCAGCAGGAGGGCATCATGGCAGCAGCATTATAATAGCTAAAGAGACAAGAAACCTGGTTCAGGCAAGAG AACCCAGTAATGAGGATAAATGA
AA sequence Show only first row Show all	>Potri.018G033700.1 pacid=42800773 polypeptide=Potri.018G033700.1.p locus=Potri.018G033700 ID=Potri.018G033700.1.v4.1 annot-version=v4.1 MAMVMTMVQQSKNNNANSGHSNSVNINNSTATSQQQQKQQVKAMFHDFLGMKATTDSPVVLAPKYKDGSPSASASLGASSGGGRGPLSSTSDLASERQAG NHLEGIPFYGPRSDISGPEISNRLAGSKRSNSDSAFTGPRDGVPQMAHDSTESLHLMKMLKNGGGGEWSRRSNDDEVFYGMQSKRPSSASLSLQPSAGNR LDANVSKWERSIPMGVGAYPTRGGQFVPFTHQIPTNRFRDTNAGPSVISQSAADEGSRTGIKGPGILSSINAGSGISEKNSSGGLSSGGKPKIGIHISEP ESSTPASQKGLTSASRQMTIFYGGQAHVFDDVHPNKADVIMSLAGSNGGSWSTTYSPKPTARQGSESFMTSNEYEGAVAANTPFPHEFRGRTFVTGNATH AVGSGDRISTPAGGHHGSSIIIAKETRNLVQAREPSNEDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Potri.018G033700 [exp]	0	1
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.005G033700 [exp]	18.16	0.6038
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G076601 [exp]	24.18	0.6065
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.013G158000 [exp]	29.52	0.6226	Pt-P68.2
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.010G073600 [exp]	47.71	0.5824
AT1G50660			unknown protein		Potri.004G015800 [exp]	50.10	0.6210
AT1G18070			Translation elongation factor ...		Potri.013G093400 [exp]	57.25	0.6125
AT1G17410			Nucleoside diphosphate kinase ...		Potri.003G068100 [exp]	65.19	0.6006
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112700 [exp]	69.17	0.5715
AT5G25080			Sas10/Utp3/C1D family (.1)		Potri.018G018100 [exp]	71.73	0.5689
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G093900 [exp]	87.53	0.5591

Compare expression of checked genes

Potri.018G033700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.