Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25510 809 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 575 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 568 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT1G13460 568 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 558 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT3G09880 543 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 524 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 494 / 2e-172 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G54930 478 / 1e-165 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247100 [exp] 944 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G073925 [exp] 634 / 0 AT5G25510 609 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.014G157000 [exp] 583 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.017G070100 [exp] 570 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054400 [exp] 565 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.002G226200 [exp] 565 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.008G179900 [exp] 563 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054300 [exp] 560 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 554 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013141 [exp] 822 / 0 AT5G25510 780 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10008104 [exp] 768 / 0 AT5G25510 723 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10017752 [exp] 619 / 0 AT5G25510 628 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10010426 [exp] 600 / 0 AT5G25510 608 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10030002 [exp] 585 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 582 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 578 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10012116 [exp] 577 / 0 AT5G25510 598 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10032082 [exp] 563 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 547 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01603 [poplar] [flax] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Potri.018G034200.1 pacid=42800836 polypeptide=Potri.018G034200.1.p locus=Potri.018G034200 ID=Potri.018G034200.1.v4.1 annot-version=v4.1 ATGTTGAGGCAAATCTTGAGTAAGCTTCCAAGAAAATCTTCAAAAACTGACTCAGCTGAGTCAGCTCGGCTTGAGTCTCCAGTTACTCAGCAGATATCCA ATGGCTCAAGTGCAGGTTCGGGGAAGTCATCCAATGGTCCAAAAAGAACGTCTTCTGTTGTATTTCCAGCTAGTGTGGTTGCTGGGATTGAGCCACTTGT GCCATTCAAAGACGTGCCTAGTGCAGAGAAGATGAATCTCTTTGTGAGCAAAGTAAGCCTGTGTTGCGTAACTTTTGATTTCAGTGACTCAAGTAAGAAT ACACTTGAAAAGGATGTAAAGAGACAGACTTTGCTTGAACTTGTTGATTTTGTGGCTGCTGGGTCTATGAAATTTAGTGAACCTGCCATTTTAGCTATGT GTAGAATGTGCGCTGTTAATTTGTTTAGGGTGTTTCCTCCGAATTATAGGTCTAATTCGAGTAGCATTGGCGAGAATGATGATAATGATGACCCAATGTT CGATCCTGCGTGGCCTCATCTGCAAATTGTGTATGATTTGTTGCTTAGATTCATCAATTCTACGTGCTTAGATGCGAAAGTTGCTAAGAAGTACATAGAC CATTCGTTTATATTGCGGCTGCTTGATTTGTTTGACACGGAGGATCCAAGAGAAAGGGAGTGCTTAAAGGCTATATTGCACAGGGTTTATGGGAAGTTTA TGGTGCACAGGCCATTTATTCGAAAGTCTCTGAGCAATATATTCTATAGATTTGTGTTTGAGACTGAGAAGCATAATGGGATTGCAGAGTTGTTGGAGAT TTTTGGGAGTATAATCAGTGGGTTTGCCATGCCTTTGAAAGAGGAGCACAAGATTTTCTTGTGGAGGGTTTTGATTCCTCTGCATAAGCCGAAGTCTGTG GGAGTTTACTTTCAGCAGTTGTCATATTGTGTGGTACAATTTATTGAGAAGGAGCCCAGGTTGGCGAGCATGGTGATAAAGGGGATACTGAAATACTGGC CAATAACTAATAGCCAGAAGGAGGTAATGTTCCTGGGTGAGTTGGAAGAGATTTTGGAAGCAATTAGCATGGTGGAGTTTCAAAAGGTCATGGTTCCATT GTTCTGGCGGATTGGATGCTGCATTAATAGTCTCCACTTCCAGGTGGCTGAAAGAGCCCTCTTCTTATGGAACAATGACCAAATTGTCAACTTGATTGCT CACAATAGGCCTGTGATTCTGCCCATCATATTTCCAGCATTAGAAAAGAATGCCCATGACCATTGGAACCAAGGGGTGCTCAATTTAACTCTAAACGTCA GGAAGATGTTCTCAGAGATGGACGATGCATTGTACCTGGCCTGCCTTGATCAGTTCAGGGAGGATGAAGAAAGGCAAAGCGTATTGGCTGAGCAGCGGAA GGAAGCATGGCAGCGGCTGGAGTATGCTGCCAGTCTCAAGCCAATAACTGGAAACACAGCCGTTTTGGTAACTCCTTTGGCGACCTCAATTGCCTGTTAA
AA sequence Show only first row Show all	>Potri.018G034200.1 pacid=42800836 polypeptide=Potri.018G034200.1.p locus=Potri.018G034200 ID=Potri.018G034200.1.v4.1 annot-version=v4.1 MLRQILSKLPRKSSKTDSAESARLESPVTQQISNGSSAGSGKSSNGPKRTSSVVFPASVVAGIEPLVPFKDVPSAEKMNLFVSKVSLCCVTFDFSDSSKN TLEKDVKRQTLLELVDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRSNSSSIGENDDNDDPMFDPAWPHLQIVYDLLLRFINSTCLDAKVAKKYID HSFILRLLDLFDTEDPRERECLKAILHRVYGKFMVHRPFIRKSLSNIFYRFVFETEKHNGIAELLEIFGSIISGFAMPLKEEHKIFLWRVLIPLHKPKSV GVYFQQLSYCVVQFIEKEPRLASMVIKGILKYWPITNSQKEVMFLGELEEILEAISMVEFQKVMVPLFWRIGCCINSLHFQVAERALFLWNNDQIVNLIA HNRPVILPIIFPALEKNAHDHWNQGVLNLTLNVRKMFSEMDDALYLACLDQFREDEERQSVLAEQRKEAWQRLEYAASLKPITGNTAVLVTPLATSIAC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G034200 [exp]	0	1
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Potri.003G052100 [exp]	2.00	0.9228
AT5G56510		APUM12	pumilio 12 (.1)		Potri.003G222300 [exp]	3.46	0.9222
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144241 [exp]	3.46	0.9355
AT5G51540			Zincin-like metalloproteases f...		Potri.015G129300 [exp]	6.24	0.9236
AT4G39050			Kinesin motor family protein (...		Potri.009G122100 [exp]	6.24	0.9170
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036800 [exp]	7.48	0.9150
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.003G120000 [exp]	8.77	0.9192
AT2G01070			Lung seven transmembrane recep...		Potri.001G209400 [exp]	8.83	0.9300
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.017G139300 [exp]	10.09	0.9135
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	13.41	0.9195

Compare expression of checked genes

Potri.018G034200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.