Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32600 465 / 2e-162 RING/U-box superfamily protein (.1) AT1G80400 375 / 1e-127 RING/U-box superfamily protein (.1) AT4G26580 156 / 8e-44 RING/U-box superfamily protein (.1.2) AT5G55970 155 / 3e-43 RING/U-box superfamily protein (.1.2) AT3G61180 130 / 6e-34 RING/U-box superfamily protein (.1) AT1G68070 119 / 6e-30 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G11680 119 / 1e-29 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 115 / 7e-29 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT2G01735 108 / 4e-26 RIE1 RING-finger protein for embryogenesis (.1) AT1G63170 102 / 1e-23 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247000 [exp] 659 / 0 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.011G094800 [exp] 164 / 1e-46 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.001G371200 [exp] 163 / 3e-46 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.014G075000 [exp] 140 / 1e-37 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.008G134900 [exp] 135 / 9e-36 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.002G155200 [exp] 135 / 1e-35 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.003G123300 [exp] 118 / 3e-29 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.010G106300 [exp] 110 / 7e-27 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G139900 [exp] 69 / 1e-12 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013144 [exp] 507 / 2e-179 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10008106 [exp] 421 / 4e-146 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10011475 [exp] 406 / 1e-139 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10023112 [exp] 387 / 6e-132 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10017750 [exp] 174 / 7e-51 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1) Lus10033075 [exp] 152 / 2e-42 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1) Lus10022567 [exp] 152 / 5e-42 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2) Lus10041359 [exp] 127 / 1e-32 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 117 / 5e-29 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10021801 [exp] 117 / 6e-29 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.018G034400.2 pacid=42802064 polypeptide=Potri.018G034400.2.p locus=Potri.018G034400 ID=Potri.018G034400.2.v4.1 annot-version=v4.1 ATGGATGTTGCCTCAACGGAACTACATTCTGAAAATCAGACTGACACTTTCCCATTGTTAATGGAGCGGCAAGAGAATCCTAACAGTAGTGAGCATATTA TTGACATACGTAACGAGGTCTCTGTATCACCATCTCACAATAGAATTTCAACTGGTTTGGAAGCGTCATTGCATGAGGACAGACCTTTGAGTGGCGTGAG AGCACCCACTTCTCCGCCTCCGACATCTTTGTCTAATGGAACAAACTCTCGGAGCTCCTCATTAATAAGGAGAGGGGAAGCTCGTCGACGCAGGAGTCCT TTGAACTCTGGTTTATGGATTTCTGTTGAATTGGTTCTCACGTTGAGCCAGATTATTGCGTCTATTGTTGTTTTGTCTGTGTCGAGGAAGGAACATCCAC GTGCACCATTGTTTGCATGGATTGTTGGTTATGCATCAGGATGTGTGGCAACCCTCCCTCTTCTTTACTGGCGTTATAGTCATCGTAACCAGGCTTTGGA GCAAGACTCAGCTCAAAATCATCAGGGTTCTGCACATATTAACGTTCCTGCAGGACCCTTTTCTCTTTCAGTTAGTAGGAATTCAGAAGGGGAGGATCGC CGATCTGCTACTACATCACCTAGAGGTGGCCAAAATGCAGTACTGAATGCAAGACTCAAGGTTTTGTTGGAATACTTCAAAATGGCTTTGGATTGCTTTT TCGCAGTTTGGTTTGTGGTTGGCAATGTGTGGATATTTGGAAGCCACTCATCTGCGGAGGAGGCTCCAAACTTGTACAGGTTATGCATAGTGTTTCTTAC ATTTAGCTGTATCGGATATGCTATGCCCTTTATTCTGTGTGCAACAATCTGCTGTTGCTTGCCTTGTATAATTTCTATTCTCGGGTTTAGAGAGGATCTG ACACAGACAAGGGGAGCCACACCCGAATCAATTGATGCCTTGCCAACGCACAAGTTTAAGCTGATTAAAAATAGAAATGGTGAGGATAGCAGCTCTGGTG CTGCTGATGGTGGGATCGTGGCTGCAGGGACAGAAAAGGAACGTGTGATTTCAGGAGAAGATGCAGTTTGCTGCATTTGTTTGGCAAAATATGCAAACAA TGATGAGCTGAGGGAGCTACCATGTTCTCATTTCTTCCATAAGGATTGTGTAGACAAGTGGCTGAAGATCAATGCATCATGTCCTCTTTGCAAGAGTGAG GTCGGTGAAAGTATTTTAGGTTCACTCCCCGGGTTAAATTCTAGCCAGAGACGGGTTGAAAATGGGGCCGGCAATGGCATGGCCAGCACCATGTTTTGA
AA sequence Show only first row Show all	>Potri.018G034400.2 pacid=42802064 polypeptide=Potri.018G034400.2.p locus=Potri.018G034400 ID=Potri.018G034400.2.v4.1 annot-version=v4.1 MDVASTELHSENQTDTFPLLMERQENPNSSEHIIDIRNEVSVSPSHNRISTGLEASLHEDRPLSGVRAPTSPPPTSLSNGTNSRSSSLIRRGEARRRRSP LNSGLWISVELVLTLSQIIASIVVLSVSRKEHPRAPLFAWIVGYASGCVATLPLLYWRYSHRNQALEQDSAQNHQGSAHINVPAGPFSLSVSRNSEGEDR RSATTSPRGGQNAVLNARLKVLLEYFKMALDCFFAVWFVVGNVWIFGSHSSAEEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGFREDL TQTRGATPESIDALPTHKFKLIKNRNGEDSSSGAADGGIVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSE VGESILGSLPGLNSSQRRVENGAGNGMASTMF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32600			RING/U-box superfamily protein...		Potri.018G034400 [exp]	0	1
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Potri.006G266800 [exp]	6.16	0.7114
AT1G54210		ATATG12, APG12,...	AUTOPHAGY 12 A, AUTOPHAGY 12, ...		Potri.001G169700 [exp]	24.73	0.6593
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.004G106300 [exp]	39.98	0.6080
AT4G27130			Translation initiation factor ...		Potri.007G122600 [exp]	59.24	0.5977
AT2G43780			unknown protein		Potri.019G096700 [exp]	60.89	0.6109
AT3G61200			Thioesterase superfamily prote...		Potri.014G078900 [exp]	73.02	0.5923
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Potri.014G138800 [exp]	77.45	0.5986	GPX4.1,PtrcGpx4
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Potri.016G084800 [exp]	87.90	0.6076	APX1.1
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Potri.001G327300 [exp]	95.78	0.5748
AT2G28370			Uncharacterised protein family...		Potri.016G090100 [exp]	97.41	0.5964

Compare expression of checked genes

Potri.018G034400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.