Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25520 512 / 2e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2) AT5G11430 478 / 1e-152 SPOC domain / Transcription elongation factor S-II protein (.1) AT2G25640 457 / 3e-146 SPOC domain / Transcription elongation factor S-II protein (.1) AT3G29639 76 / 1e-15 unknown protein AT2G38560 62 / 8e-10 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1) AT2G42730 62 / 2e-09 F-box family protein (.1.2) AT4G18720 61 / 2e-09 Transcription factor IIS protein (.1) AT5G42325 46 / 6e-05 Transcription factor IIS protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246800 [exp] 1614 / 0 AT5G25520 536 / 1e-173 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.T125307 [exp] 129 / 3e-30 AT2G25640 131 / 1e-31 SPOC domain / Transcription elongation factor S-II protein (.1) Potri.018G125500 [exp] 128 / 3e-30 AT2G25640 131 / 1e-31 SPOC domain / Transcription elongation factor S-II protein (.1) Potri.016G138100 [exp] 67 / 2e-11 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G109300 [exp] 66 / 5e-11 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013146 [exp] 752 / 0 AT5G11430 550 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10008108 [exp] 751 / 0 AT5G11430 559 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10025131 [exp] 68 / 1e-11 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 65 / 1e-10 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10022735 [exp] 63 / 5e-10 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 63 / 7e-10 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10034247 [exp] 56 / 9e-08 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029016 [exp] 44 / 0.0002 AT2G38560 131 / 1e-36 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07500 [poplar] [flax] TFIIS_M Transcription factor S-II (TFIIS), central domain CL0616 [poplar] [flax] SPOC PF07744 [poplar] [flax] SPOC SPOC domain
Representative CDS sequence Show only first row Show all	>Potri.018G034500.2 pacid=42800971 polypeptide=Potri.018G034500.2.p locus=Potri.018G034500 ID=Potri.018G034500.2.v4.1 annot-version=v4.1 ATGTCCAACAATCTTGTATCACAGCAATCATCAGTGCAGAGCATCAAATTGGGTCAGTCGGAAGACATTTCAAACAAACTGGACTCGTTGATGCAAATGG GTTTGATGGAACCTGGAATCCATGATCCTGCATTACAACAGTTGTCCATGTCGAACATGCAAATGGGACAGATGGGACCAATTTCAACTGATGCTTTATC ACAGCAGATGTCGATATCAAACATCCAAGTACAGTTGTCAGAACCTTTGCCTAATGATCATGTTTTGCAGAACTTCTCGGGATCAAGTATACAAGCAGGA CACATGGAACCACGTGCATACAATATGGTTCCAGAGAAATTCTTATCTAGGAGGCAACTGGGAGACATGGAAACTGTGTTTCATAATACTGGATCACAGC AGTCATCACTATTGAACAAGCGAAAGGCCCCAGAGGAACCTTCTTCCAACAATTCTTTGTCACGGAAATTATCAATGTCTCACAACCAGGTTGCGCAAAT GGAACTTAGGCCATGGCTACAGCCAACCCTGACACCAAATAAAGTACCTGTACAGATCCAGTCTATTTTAAATTCGTCAGGATCAAATCGTCCACAAGCA CCATATAAGAGGTCAGCTGCTAGTAAAACTGGACTGCAGCAATCGTCAGTTCAGAAAAATCAAACTGGACAGATGCATCCATCTTCGAAGGCCAACAGTG AGTCTGATTCTGTGAGGTCCAAGCTAAGACAATCACTGGCAGATGCGCTGACTCTGGTTTCTCAGCAGCACGATAAAACTTCAAGTTCTGGAAAGTACTC TGTAGGTGAGGATGCAAGTGCTCAGGTGCAGAAACACAAACAGACTCAACCTATGGGACAAACTTCTGGTGCAGCTGGTTTTCACCATTTGTCTGAGGAG CCCAAGGAATCCTTGTCCACCAAGGACAATTCTTTTACCCAAAACCATTCTGACAGCCATAAGACATCTCAGGAAACTTCCAACACTCGTGGAAATGCTT ATGCAACAGAGACATCAAACAATGACGGGCAGGAATTACCATCCAGCAATATTTTCCGTGATGAGGATATTTCATTTAGTGACAGTTTTTTGGTAAAAGA TGAATTGTTGCAGGGCAATGGATTGTCCTGGATACTGGAACCTGATGCAGAGATAGCAGAGAAAAAGGAGATTGAAGCTGCCCAAACACCGCATGGCCAG GAGCATATCGATGAATATGTTGGAAAAGAAGTAGTCAGGGATCCGCGAGTTTTGGCCTCTGAAATTGAAGCAGAACTCTTCAAATTATTTGGAGGGGTAA ACAAGAAGTACAAGGAGAAGGGCAGGTCTCTTTTGTTCAATTTGAAAGATCGTAATAATCCTGAACTAAGAGAAAAAGTTATGTCTGGAGAGATTCCCCC AGGGCGACTCTGCTCTATGACTGCAGAGGAACTTGCATCTAAGGAGCTTTCGGAATGGCGGATGGCAAAAGCCGAGGAACTTGCTCAAATGGTGGTTTTG CCTGATTCGGATGTTGATATCAGACGTTTGGTGAAGAAAACTCACAAGGGTGAGTTTCAAGTTGAAGTTGAACAGGATAGTGTAGCAATGGAGGTTGCTG TTGGGCTGAATTCATTCACTACACAACCAAAATCAGATGAGAAGGAAGGTTCTCTGGGTTCTAAACCTGATCAAATGAAAGACAAAGTGAATGCTACTGA TGACAAGAGTGATTTAGAAGACAAGGCAGCTTCTTATACGCTTACGATTCCTTCAAGTGAAGGAAATGATTTGATGCAAGGACTCATGGTGGACGATGAA TTGAAAGATGCAGAATTTCTTCCTCCAATTGTCTCTCTGGATGAATTCATGGAATCCCTTGATTCAGAACCACCGTTTGAAAATTTACCAGAGGATGCTG GAAAAACAACACCCGCCCTTGACAATGATGATTCACAGCTTCGGCCAGAAGCCAAGTCTCATGTGGTAGCTACAAAAGATGCTGTTGGTAGCATCCCAGA AAAATCTGAAAACGTTGAGGAAACTAGCACATCATCTGAGGCTGATGGGAGATATGCCAGCATTCGTGTAGAATCCAAAACTACACCCTCTACTGGTGCA TCCAAGGGTGAACATGTCTGGGAAGGCTTACTTCAGCTGAGTATTTCCACCATGACCTCAGTTGTTGGCATCTTTAAAAGTGGTGACAAAACGTCTGCAA AAGAGTGGTCTGGCGTTGTTGAGGTCAAAGGGAGAGTCAGACTTGATGCGTTTGAGAAGTTTCTCCAGGAGCTCTTGATGTCCCGAAGTCGTGCTGTTAT GGTAGTGCACTTTGTTTGCAAGGAGGGGTCCACGGAGAGTGAGAGGGCAAGTCTTAGAGGGGTTGCCGATTCCTATGTTTTGGATGAGAGAGTGGGTTTT GCTGAGCCTGCTCATGGAGTGGAACTTTATTTATGCCCTTCTCATTCAAAGACACGTGAAATGCTCATCAAGGTCCTTCCAACGGACCAACTTGAGGCCC CTAATGCTATTGATAATGGTCTGATTGGTGTTATTGTATGGAGAAGAGCTCAAGTAACGTCAATAATATCACCCACCGCTGCATCACACCATAAACTCAA CTCAAAAAAGCAACACCACCTTACTTCTAGGAGACACCATGATAAGGATACTAATATGAATGTGAGTATTGCATCAAAACATCCGTTGCCACCACCTCGT GGTGGAACTTCTGCCCATCCCAACCCCCAACCTGATGAAGACGATGATGATGTGCCTCCCGGGTTTGGCCCACTGGCTGGCCGGGATGAGGATGACTTAC CGGAGTTCAATTTTTCTAGCGGCTCTATTGCATCAAGATCAGAGTTTTCGAACCAAAACCCTACTAGGAGACAGGGAATGGCCCCTCACAATTCATATCC CCAAATCCCATCTCATCCTCTAGATTTGAGAGAACTTGTACACAGATATGGACAACCTAAAACCGATGTTCTACCAGTGCAGCCATGGAATGATGATGAT GACGACGACGACATGCCAGAGTGGCACCCAGAAGAAACCCCAAAGCAGCGCACTCATCCTCAGCCAATGCACGTGCATGGTGTACGGCAGCCTATTCTAA GAGCCCACATGGTGCAGCAAAGAGTACACCAGACAAGGGCACCATTAGGAAGATCTCCAGCCATGCCTCAAGTGAATCTGATACATGGTCAGCAAAACGG TGCCTCTTCTTGGCAGCAAGGCGCTTGGGCAGCTCCTCAGCCTGGACCCCATGGTTATCCTGCTTATCAATCTGGTGGAGGGCAAGTCAATGGCTCGCCC GGGCTGCAGGGCTTGGCTTGGCGTAGAGATGCTCCTACAAGTAGAGGCTTTTGA
AA sequence Show only first row Show all	>Potri.018G034500.2 pacid=42800971 polypeptide=Potri.018G034500.2.p locus=Potri.018G034500 ID=Potri.018G034500.2.v4.1 annot-version=v4.1 MSNNLVSQQSSVQSIKLGQSEDISNKLDSLMQMGLMEPGIHDPALQQLSMSNMQMGQMGPISTDALSQQMSISNIQVQLSEPLPNDHVLQNFSGSSIQAG HMEPRAYNMVPEKFLSRRQLGDMETVFHNTGSQQSSLLNKRKAPEEPSSNNSLSRKLSMSHNQVAQMELRPWLQPTLTPNKVPVQIQSILNSSGSNRPQA PYKRSAASKTGLQQSSVQKNQTGQMHPSSKANSESDSVRSKLRQSLADALTLVSQQHDKTSSSGKYSVGEDASAQVQKHKQTQPMGQTSGAAGFHHLSEE PKESLSTKDNSFTQNHSDSHKTSQETSNTRGNAYATETSNNDGQELPSSNIFRDEDISFSDSFLVKDELLQGNGLSWILEPDAEIAEKKEIEAAQTPHGQ EHIDEYVGKEVVRDPRVLASEIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELREKVMSGEIPPGRLCSMTAEELASKELSEWRMAKAEELAQMVVL PDSDVDIRRLVKKTHKGEFQVEVEQDSVAMEVAVGLNSFTTQPKSDEKEGSLGSKPDQMKDKVNATDDKSDLEDKAASYTLTIPSSEGNDLMQGLMVDDE LKDAEFLPPIVSLDEFMESLDSEPPFENLPEDAGKTTPALDNDDSQLRPEAKSHVVATKDAVGSIPEKSENVEETSTSSEADGRYASIRVESKTTPSTGA SKGEHVWEGLLQLSISTMTSVVGIFKSGDKTSAKEWSGVVEVKGRVRLDAFEKFLQELLMSRSRAVMVVHFVCKEGSTESERASLRGVADSYVLDERVGF AEPAHGVELYLCPSHSKTREMLIKVLPTDQLEAPNAIDNGLIGVIVWRRAQVTSIISPTAASHHKLNSKKQHHLTSRRHHDKDTNMNVSIASKHPLPPPR GGTSAHPNPQPDEDDDDVPPGFGPLAGRDEDDLPEFNFSSGSIASRSEFSNQNPTRRQGMAPHNSYPQIPSHPLDLRELVHRYGQPKTDVLPVQPWNDDD DDDDMPEWHPEETPKQRTHPQPMHVHGVRQPILRAHMVQQRVHQTRAPLGRSPAMPQVNLIHGQQNGASSWQQGAWAAPQPGPHGYPAYQSGGGQVNGSP GLQGLAWRRDAPTSRGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	0	1
AT5G49220			Protein of unknown function (D...		Potri.008G213300 [exp]	2.44	0.8730
AT3G62200			Putative endonuclease or glyco...		Potri.005G003800 [exp]	4.69	0.8385
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Potri.001G403200 [exp]	6.92	0.8441
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	6.92	0.8777
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.004G002900 [exp]	7.34	0.8654
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.005G026600 [exp]	8.36	0.8412
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.015G013600 [exp]	8.48	0.8425
AT1G32730			unknown protein		Potri.001G148500 [exp]	10.00	0.8547
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.010G148000 [exp]	12.72	0.8277
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Potri.012G056200 [exp]	14.49	0.8516

Compare expression of checked genes

Potri.018G034500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.