Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) AT2G20560 356 / 6e-123 DNAJ heat shock family protein (.1) AT3G08910 350 / 1e-120 DNAJ heat shock family protein (.1) AT1G59725 345 / 2e-118 DNAJ heat shock family protein (.1) AT5G01390 342 / 3e-117 DNAJ heat shock family protein (.1.2.3.4) AT1G10350 342 / 6e-117 DNAJ heat shock family protein (.1) AT4G28480 239 / 8e-77 DNAJ heat shock family protein (.1.2) AT2G20550 229 / 1e-73 HSP40/DnaJ peptide-binding protein (.1.2) AT3G47940 230 / 3e-73 DNAJ heat shock family protein (.1) AT1G44160 171 / 2e-50 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246700 [exp] 492 / 2e-176 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 373 / 3e-129 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 367 / 6e-127 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 345 / 1e-118 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 342 / 3e-117 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 340 / 8e-117 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 260 / 5e-85 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 257 / 1e-83 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 256 / 3e-83 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041254 [exp] 394 / 7e-138 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10008109 [exp] 394 / 2e-130 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1) Lus10013981 [exp] 358 / 1e-123 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 352 / 5e-121 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10030803 [exp] 340 / 9e-117 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 335 / 1e-113 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10027803 [exp] 324 / 5e-110 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 323 / 6e-110 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 306 / 3e-103 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10017687 [exp] 245 / 3e-79 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G034600.1 pacid=42801972 polypeptide=Potri.018G034600.1.p locus=Potri.018G034600 ID=Potri.018G034600.1.v4.1 annot-version=v4.1 ATGGGGGTTGATTACTATAACATATTGAAGGTGAACAGGAATGCAACAGATGGTGATCTAAAGAAGTCGTATAGAAGATTGGCTATGAAATGGCATCCTG ATAAGAACCCCACTAACAAGAAAGAAGCTGAAGCCAAATTCAAGGAGATCTCTGAGGCATATGAGGTCTTGAGTGATCCACAAAAAAGAGCAATTTATGA TCAGTATGGTGAAGAAGGATTAAAAGAAGCACCACCGTCTGGCAGTGGCGGCTCCCCTTTTGGCAACGGTAGTGGGTCAAATGGTTTCAATCCTAGGAAT GCAGAGGATATCTTTGCAGAATTCTTTGGGAGCAGTCCTTTTGGATTTGGATCAACAGCAGCTGGTAGATCCTCGAGGTTCCAATCAGATGGAGGGTCGT TTGGTTCATTTGGCTGTACTGATAATCTTTTCCGAACTTATAGCGAGGGAACTACACTAAGGAAACCACCACCTGTAGAGAGCAAATTGCCTTGTAGCCT CGAGGAACTATACTCTGGATCAACAAGGAAAATGAAGATATCGAGAACTGTAGTTGATGCCCGTGGGCGACAAATACAAGAAACAGAAATATTAACCATT GATGTGAAGCCAGGGTGGAAGAAGGGAACAAAGATTACATTCCCGGATAAAGGAAATGAGCAGCAGAATCAGCTTCCAGCAGACCTTGTGTTTATTATTG ATGAGAAGCCCCATACCACATACAAGAGAGATGGAAATGACCTTATCATCAACCACAAGGTGACACTAGCCGAGGCCCTAGGAGGAACAACAGTAAATCT CACCACACTTGACTGCCGTAATCTATCAATTCCTGTTCATGATATAGTGAGCCCTGGTTACGAGCTTGTTGTGGCCATGGAGGGTATGCCAATAGCGAAG GAGCCAGGTAATAGGGGCAATATGAGGATCACATTTGAAGTGAAGTTCCCAACAAGATTGACACCAGAGCAGCGAGCAGGGCTCAAGCGCGCATTAGGGG GTTAA
AA sequence Show only first row Show all	>Potri.018G034600.1 pacid=42801972 polypeptide=Potri.018G034600.1.p locus=Potri.018G034600 ID=Potri.018G034600.1.v4.1 annot-version=v4.1 MGVDYYNILKVNRNATDGDLKKSYRRLAMKWHPDKNPTNKKEAEAKFKEISEAYEVLSDPQKRAIYDQYGEEGLKEAPPSGSGGSPFGNGSGSNGFNPRN AEDIFAEFFGSSPFGFGSTAAGRSSRFQSDGGSFGSFGCTDNLFRTYSEGTTLRKPPPVESKLPCSLEELYSGSTRKMKISRTVVDARGRQIQETEILTI DVKPGWKKGTKITFPDKGNEQQNQLPADLVFIIDEKPHTTYKRDGNDLIINHKVTLAEALGGTTVNLTTLDCRNLSIPVHDIVSPGYELVVAMEGMPIAK EPGNRGNMRITFEVKFPTRLTPEQRAGLKRALGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25530			DNAJ heat shock family protein...		Potri.018G034600 [exp]	0	1
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Potri.010G190400 [exp]	3.87	0.8970
AT2G15240			UNC-50 family protein (.1)		Potri.009G095900 [exp]	5.29	0.9122
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.011G103700 [exp]	7.21	0.8810
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G080400 [exp]	8.24	0.9031
AT5G01010			unknown protein		Potri.016G143700 [exp]	9.16	0.9006
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Potri.001G315800 [exp]	13.26	0.8977
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.008G053100 [exp]	20.92	0.8882	UXS1.2
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Potri.008G208000 [exp]	21.90	0.8821
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	30.00	0.8756
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.006G157000 [exp]	35.72	0.8827

Compare expression of checked genes

Potri.018G034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.