Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32620 613 / 0 Enhancer of polycomb-like transcription factor protein (.1.2) AT5G04670 159 / 2e-39 Enhancer of polycomb-like transcription factor protein (.1) AT4G31880 62 / 4e-09 unknown protein AT1G15940 59 / 2e-08 Tudor/PWWP/MBT superfamily protein (.1) AT5G10950 56 / 2e-07 Tudor/PWWP/MBT superfamily protein (.1) AT4G02070 55 / 8e-07 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT1G80810 54 / 8e-07 Tudor/PWWP/MBT superfamily protein (.1.2) AT2G31650 53 / 2e-06 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 53 / 2e-06 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G47690 52 / 4e-06 binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246200 [exp] 2348 / 0 AT4G32620 1021 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.008G024300 [exp] 177 / 4e-45 AT5G04670 488 / 3e-162 Enhancer of polycomb-like transcription factor protein (.1) Potri.010G235900 [exp] 159 / 2e-39 AT5G04670 518 / 2e-173 Enhancer of polycomb-like transcription factor protein (.1) Potri.003G181300 [exp] 69 / 3e-11 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.014G121701 [exp] 68 / 7e-11 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.001G046500 [exp] 62 / 5e-09 AT4G31880 267 / 1e-76 unknown protein Potri.016G005400 [exp] 56 / 4e-07 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 54 / 1e-06 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.018G020400 [exp] 53 / 3e-06 AT4G31880 389 / 3e-120 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041252 [exp] 1336 / 0 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10021959 [exp] 732 / 0 AT4G32620 870 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10008985 [exp] 133 / 3e-31 AT5G04670 325 / 2e-99 Enhancer of polycomb-like transcription factor protein (.1) Lus10028841 [exp] 134 / 4e-31 AT1G66950 1374 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10030133 [exp] 61 / 2e-09 AT1G15940 63 / 4e-11 Tudor/PWWP/MBT superfamily protein (.1) Lus10009948 [exp] 58 / 2e-09 AT1G15940 56 / 1e-09 Tudor/PWWP/MBT superfamily protein (.1) Lus10010010 [exp] 60 / 3e-08 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10018332 [exp] 57 / 1e-07 AT4G31880 464 / 2e-149 unknown protein Lus10017121 [exp] 57 / 2e-07 AT4G31880 473 / 2e-152 unknown protein Lus10039082 [exp] 53 / 3e-06 AT5G47690 1661 / 0.0 binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10513 [poplar] [flax] EPL1 Enhancer of polycomb-like
Representative CDS sequence Show only first row Show all	>Potri.018G034900.3 pacid=42801467 polypeptide=Potri.018G034900.3.p locus=Potri.018G034900 ID=Potri.018G034900.3.v4.1 annot-version=v4.1 ATGGAAAATAGAGTAGGAAAGTCTCATGGAGTGGAGATTCCTAAAAAATCGAGATCTTTGGATCATAAAAGTCTCTATGAATCTAAAAATCCTAAAGGGG ATCAAAATAGTAATAATTTGAAGCGGAAGGGTGGTGGTGCAGGTGATGATGAGAAGGGACATGAGAAGAAGAAGAGTAGAAAGGAGGTTTCTATTAGTAG TTTTAAGAATAAGAATGTTAACAGTAGCTATAGTAAGAGTTTAAAGGAAGTGTATAATAGGAGTTTGAGTTCAGGTTTGAAGGAATCGAAGTCTGGGTTG ATTCAGAGATTGGCTGATAGTAATGGATTTAGTGGTGTTTCCCTACCTCTGGATGGTGGGGTTTTTAAAATCCCTAGGCGGAAACGGGGTTTTGTGGGGC GAAAGAAAGTGGATAATGGTAGTGAAGGGTCCAAGCTGACAGGAGGGTTTGGCAGGGAAGCAGGCAATGTTGATCAGGCTGATAAGCTAACTGGTGAAGA TGAGAGCAAATGGGTTGAGAATGGTGGTCGAGAGTTGAAAGCAGTGGGGATATCTGGTGGTGAAGTGGATGACGTCGATCAGGCTAGTAAGTTAACTGTT GAAGATAAGGGCAAGCAGGTTGAACCTTTGAAGGCTAAACAGAAGAAAGGTTCTGATGACTTGAAAGAAAATAGAAATGATGAACTGAATGCAAGCAGAA ATTTGGAGGAGGAGGACGGGCATGAGGGCCATTCAGTTGCAACAAAAAGAGATTCATCATCGAAAAGGCCTCACAATGGCCCTTTGGTTGATAACAATGG TGATTTATCTTTGAAAAAGTCACTTAGGAAGCGGAGCAGGAAAAAGGGCATGGTGTCCGATAAGAAAAGAACCAAGGAGGATGACCCAACAGTTGATACT TCTATGAAGATGAGTGGTGTTTTCCATGATGATGAGGAGGAGAATCTCGAAGAGAATGCAGCAATGATGCTATCATCACGATTCGATCCCAGCTGCACGG GCTTTTCTTCAAACAGCAAAGCCTCAGCCTCGCCATCTAAAAATGATTTCCAAGAATTTGTTGCTCATGGGTCTAGCTATGTCTCTGGATCTGAATCTTC ATCTGTTGATACCGATGGTAGAGTATTGCGACCTAGGAAACAAAACAAAGAGAAGGGTAGCACCAGGAAACGACGCCATTATTATGAAGTTTTCTCTGGG GACTTGGATGCTCATTGGGTGTTGAACCGGAGAATCAAGGTCTTTTGGCCTCTGGACCAGAGATGGTATCATGGTCTTGTTGGTGACTATGACAAAGAGA GGAAGCTTCATCACATAAAATATGATGACCGGGATGAGGAATGGATTGATCTCCAAAATGAAAGATTTAAACTCTTGCTGCTCCCTAGTGAAGTTCCAGG TAAGATGCGAAGGAAAAGATCAATAACAAGCAACAAGCGCTCTGATGGGTGGAAAGAAAAACTGACATCCAGAAAAGAAAAGAGGGACTTGATGACAGAG GATGATAGCTATGAAGGGGCATATATGGAGTCGGAGCCTATCATCTCATGGTTGGCTCGATCTACTCATAGAGTCAAATCGTCTCCTCTTCATGCCTTGA AGAAACAGAAAACATCCTATCTATCTTCTACTATGACACCACTGTCTTCCCTAAAAAGAGATAAATGCAAGTTATCTTATAATTCTGCTTCATCAGACAG TGTAGCCACTGATGGAAGGAGTGATTTGCCTGTGATGGAGAGCCCTGTTTTCCCCAAAGATAGCAAGCTCCCTATTGTTTATTACAGGAAGCGGTTTCGC AAGACAAGCAATGTGTTGTGTCATGAATCCAAGGGCATTTGTGTTTCTGCCAGTGTACCAGAAACTGATAGTTCTCTTGTGCCTCTTACTGTTGCTTTTT GGGCTTTGCAAGAGCATTATACTTCTCTTGGAAGATTGGATCGTGACCTGGATTCGAATAGGTTGGATTCTTCTGATCCTTTATGGTCAACTGGTAATGC AGGGTTGTTGAGATTAAATATTTCTGCCACAGAACCAAGATGGTTGAGGTTCAAGTTAAGCTTCCAATTGCCTTCTTTCTTGAATTACTACTCATTTGGC TCTGAAAATGTTTGGTTGATCCATGCTGTGCTACTGCTTCAGTATGGTATGCTTATGACTACATGGCCAAGAATTCATCTGGAGATGCTTTTTGTAGATA ATATGGTTGGATTGAGGTTTCTCTTGTTTGAAGGTTGCTTGATGCAGGCTGTAGCTTTTGTATTCCTGGTCTTAACAGTATTTCATCAACCTAGAGAGCA GGAGAAATCTGCTGACTTCCAGTTGCCAATAACTTCAATCAGGTACAGATTCTCTTGCATTCGAGATCTGAGAAAGCACTTCGCCTTTTCATTCTACAAC TTCTCTGAAGTGGAGAATTCAAAGTGGAAGTACTTGGACCATAAGCTCAAAAGGCATTGCTTGGCTTATAGGCAACTATCTCTATCCGAATGCACTTATG ATAACATTAAGGCATTGCAATGCGGAAAGAATCGACTTTTCAGTCCTTTGGTCTGCAGTGATGCCACCTTAAATAAGGTCCTGCATAGGAGATCTAGGCA GAGTATTAGCCTCATGGGGGTCACCAGAGAATCTACTTGTGTTAATGGCAGCCAGTCTTCTTTTAAGTCTGACAAGAATCACAGATATTTACCTTCATTT GCACTTTCTTTTACTGCTGCTCCTACTTATTTTTTTGGTTTGCATTTAAAGATGCTTGTGGAACATAGTGTGATGCATATTAACACTGAGGATCACAATT CAATAGAACATCCAGAAAAATCCAGTGGTTTAGTGGGTGATAGCTGCACTAGCATAGAGGACTGTTCCAAAGCATGTTTAGATTGCACACCTGGTAATGA TTTCAAGGCTTTGACAAGGGGTGCTGACTATGATGGATGCATATCCTGTGCTAAACCAGAGTCACAAAGTGTTGATGTCTCCATTTGCAGTGGTGGGGAT TGGAAAAAATCCTTATCAAACCAAAGTGGTGATGTAAACGTTGAAATTTCTGCTAGCTACAGAGATCTTGGAGAATCAGGAAGTGGTGCAATTGTCCCGT TGCAGAATTTGGAATGCAACCATTCAGAGTCACAACCCTGTGACTTGCTGTCAAGGCTGTCAATTAACAAAGATGAGACTGGTGCTGGTTCACATGCTCT TTCAAATGGTATCACGGTTGATATTCCATCAGTTAATCAATTTGACCAGCATGTTAATAAGGAATTACAAGGCGTTCAGCAGTCTTCTGATTTGTCTTGG AATATGAATGGTGGTGTTATTCCAAGTCCAAACCCTACTGCTCGCCGAAGTACCTGGCATCGAAATAGAAGTAGTTTTGCATCTTTTGGATGGTCTGAAG GAAGGGCTGACTTTCTCCAAAACAATTTTGGTAATGGACCTAAGAAGCCACGGACACAGGTTTCTTATGCATTGCCTTTTGGAGGTTTTGATTACAGCCC AAGGAATAAAGGATATCAGCAAAAAGGGTTTCCACATAAACGAATCAGGACAGCCACTGAGAAGAGGACTTCATTCATTTCCAGAGGTTCTGAAAGAAAG TTAGAGTTGTTGTCCTGTGATGCAAATGTTTTGATTACAAATGGTGACAAAGGATGGAGAGAATGTGGAGTGCAGGTTGTACTAGAGCTTTTTGATCATA ATGAGTGGAGGCTTGGTGTTAAGCTTTCTGGAACTACAAAGTATTCATACAAGGCACATCAGTTTCTGCAAACTGGGTCAACAAATCGGTTTACACATGC TATGATGTGGAAAGGAGGAAAAGATTGGACACTGGAATTTCCTGATAGGAGTCAGTGGGCTCTTTTTAAAGAGATGCATGAAGAATGCTATAATCGGAAT ATACGTGCTGCATCAGTTAAAAACATTCCGATTCCTGGGGTTCGCCTGATAGAGGAAAATGATGATAATGGAATAGAAGTACCGTTTTTTCGGGGTTGTA AGTACTTTCGGCAGCTTGAATCAGATGTTGAGATGGCTTTGGATCCATCAAGGGTGCTATATGATATGGACAGTGATGATGAACAGTGGATGCTAAAAAA TCAAAGTTCTTCAGAAGTCAATAGCAGTTCATGGCAGATTTCAGAAGAAATGTTTGAGAAGGCAATGGACATGTTTGAGAAGGCTGCATATTCTCAACAG CTGGACCAGTTTACATTCAAAGAAATAGTCGAGTTTATGACTGGAATTGAGCCCACAGAAGCCATCAAAACCATCCATGAATATTGGCAGCATAAGAGGC AGAGGAACAGAATGCCTTTAATCCGTCATCTCCAGCCGCCACTTTGGGAAAGGTATCAGCAGCAATTGAGGGAGTGGGAGCAAGCAATGACAAGAAGTAA CACAGGCATCCCTAATGGATGCCATGAGAAGTTTGCACTTTCTGACAAGCCACCCATGTATGCTTTCTGTTTGAAACCAAGGGGTTTGGAAGTGCCTAAC AAGGGATCAAAACAAAGGTCGCATAAAAAATTTTCAGTTGCTGGACAAAGCAACGGCTTAGCAGGAAATCATGACGGCTTGCACCCTTATGGAAGAAGAA TAAATGGCTTTGCTTCTGGGGATGAAAAGACAATATATTCAGTACATAACAATGAATCTTTTGATGATTCCCCGTTGCCTCAGATATCACCCAGGGTGTT TTCACCACGAGATGCTTATGGCCGTGCATATGTCTCACTGACTGGTGATGGTTATGATAGGAATAATCTCCATAAACTTTGCAGGACCAAGTCAAAGAAA CTTGGTACCTTTGTGTCTCCCTATGATGTTCAGATGGCTACTTCATATAATCACAGAATGTTGGATCAGAGAAATGGATTTCGTCATTGGAATTTGGGGT TTTCTGACTGGCCTAGCCAGCGACATCACCAGACAGATGGATATGCGAGGCATGGCCGTGAACAGTTGAATGATTCAGGTCTTGATGAGCTCAGGTTGCG TGAAGCTTCTGGTGCGGCTAAGCATGCACTTAATGTGGCTAAGCTCAAGAGACATAGGGCACAGAGATTGCTTTACAGGGCAGATCTTGCAATTCACAAG GCTGTGGTTGCCCTAATGAATGCTGAAGCAATCAAAGCTTCTTCCGAGGACATAAATGTTGATGGGTAG
AA sequence Show only first row Show all	>Potri.018G034900.3 pacid=42801467 polypeptide=Potri.018G034900.3.p locus=Potri.018G034900 ID=Potri.018G034900.3.v4.1 annot-version=v4.1 MENRVGKSHGVEIPKKSRSLDHKSLYESKNPKGDQNSNNLKRKGGGAGDDEKGHEKKKSRKEVSISSFKNKNVNSSYSKSLKEVYNRSLSSGLKESKSGL IQRLADSNGFSGVSLPLDGGVFKIPRRKRGFVGRKKVDNGSEGSKLTGGFGREAGNVDQADKLTGEDESKWVENGGRELKAVGISGGEVDDVDQASKLTV EDKGKQVEPLKAKQKKGSDDLKENRNDELNASRNLEEEDGHEGHSVATKRDSSSKRPHNGPLVDNNGDLSLKKSLRKRSRKKGMVSDKKRTKEDDPTVDT SMKMSGVFHDDEEENLEENAAMMLSSRFDPSCTGFSSNSKASASPSKNDFQEFVAHGSSYVSGSESSSVDTDGRVLRPRKQNKEKGSTRKRRHYYEVFSG DLDAHWVLNRRIKVFWPLDQRWYHGLVGDYDKERKLHHIKYDDRDEEWIDLQNERFKLLLLPSEVPGKMRRKRSITSNKRSDGWKEKLTSRKEKRDLMTE DDSYEGAYMESEPIISWLARSTHRVKSSPLHALKKQKTSYLSSTMTPLSSLKRDKCKLSYNSASSDSVATDGRSDLPVMESPVFPKDSKLPIVYYRKRFR KTSNVLCHESKGICVSASVPETDSSLVPLTVAFWALQEHYTSLGRLDRDLDSNRLDSSDPLWSTGNAGLLRLNISATEPRWLRFKLSFQLPSFLNYYSFG SENVWLIHAVLLLQYGMLMTTWPRIHLEMLFVDNMVGLRFLLFEGCLMQAVAFVFLVLTVFHQPREQEKSADFQLPITSIRYRFSCIRDLRKHFAFSFYN FSEVENSKWKYLDHKLKRHCLAYRQLSLSECTYDNIKALQCGKNRLFSPLVCSDATLNKVLHRRSRQSISLMGVTRESTCVNGSQSSFKSDKNHRYLPSF ALSFTAAPTYFFGLHLKMLVEHSVMHINTEDHNSIEHPEKSSGLVGDSCTSIEDCSKACLDCTPGNDFKALTRGADYDGCISCAKPESQSVDVSICSGGD WKKSLSNQSGDVNVEISASYRDLGESGSGAIVPLQNLECNHSESQPCDLLSRLSINKDETGAGSHALSNGITVDIPSVNQFDQHVNKELQGVQQSSDLSW NMNGGVIPSPNPTARRSTWHRNRSSFASFGWSEGRADFLQNNFGNGPKKPRTQVSYALPFGGFDYSPRNKGYQQKGFPHKRIRTATEKRTSFISRGSERK LELLSCDANVLITNGDKGWRECGVQVVLELFDHNEWRLGVKLSGTTKYSYKAHQFLQTGSTNRFTHAMMWKGGKDWTLEFPDRSQWALFKEMHEECYNRN IRAASVKNIPIPGVRLIEENDDNGIEVPFFRGCKYFRQLESDVEMALDPSRVLYDMDSDDEQWMLKNQSSSEVNSSSWQISEEMFEKAMDMFEKAAYSQQ LDQFTFKEIVEFMTGIEPTEAIKTIHEYWQHKRQRNRMPLIRHLQPPLWERYQQQLREWEQAMTRSNTGIPNGCHEKFALSDKPPMYAFCLKPRGLEVPN KGSKQRSHKKFSVAGQSNGLAGNHDGLHPYGRRINGFASGDEKTIYSVHNNESFDDSPLPQISPRVFSPRDAYGRAYVSLTGDGYDRNNLHKLCRTKSKK LGTFVSPYDVQMATSYNHRMLDQRNGFRHWNLGFSDWPSQRHHQTDGYARHGREQLNDSGLDELRLREASGAAKHALNVAKLKRHRAQRLLYRADLAIHK AVVALMNAEAIKASSEDINVDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32620			Enhancer of polycomb-like tran...		Potri.018G034900 [exp]	0	1
AT4G32620			Enhancer of polycomb-like tran...		Potri.006G246200 [exp]	1.41	0.8673
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.014G051500 [exp]	4.58	0.8121
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.002G027100 [exp]	6.16	0.8358
AT2G27950			Ring/U-Box superfamily protein...		Potri.004G217700 [exp]	6.92	0.7289
AT3G62900			CW-type Zinc Finger (.1)		Potri.014G132900 [exp]	8.12	0.8344
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.005G182100 [exp]	9.38	0.8335
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	13.03	0.8133
AT5G64550			loricrin-related (.1)		Potri.001G206600 [exp]	14.96	0.7622
AT5G11700			unknown protein		Potri.006G234500 [exp]	15.23	0.8062
AT5G22760			PHD finger family protein (.1)		Potri.004G189600 [exp]	16.58	0.7233

Compare expression of checked genes

Potri.018G034900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.