Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32630 209 / 3e-58 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) AT4G13350 182 / 6e-49 NIG NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) AT1G08680 172 / 3e-45 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) AT5G54310 64 / 2e-10 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 50 / 1e-06 AGD15 ARF-GAP domain 15 (.1) AT4G05330 50 / 3e-06 AGD13 ARF-GAP domain 13 (.1) AT3G53710 50 / 6e-06 AGD6 ARF-GAP domain 6 (.1.2) AT4G21160 49 / 1e-05 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT2G37550 46 / 8e-05 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT3G07940 44 / 0.0004 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246100 [exp] 965 / 0 AT4G32630 224 / 1e-63 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.018G076200 [exp] 351 / 2e-109 AT4G13350 371 / 3e-119 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Potri.013G068300 [exp] 175 / 8e-46 AT1G08680 499 / 2e-168 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Potri.001G406300 [exp] 71 / 2e-12 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 69 / 7e-12 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 67 / 4e-11 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 60 / 4e-09 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 58 / 4e-09 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.001G372000 [exp] 45 / 0.0002 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022113 [exp] 355 / 2e-110 AT4G32630 249 / 2e-72 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Lus10017729 [exp] 260 / 5e-76 AT4G13350 457 / 3e-153 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10033090 [exp] 187 / 4e-50 AT4G13350 338 / 4e-108 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10020306 [exp] 167 / 9e-44 AT1G08680 373 / 7e-122 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10005686 [exp] 167 / 2e-43 AT1G08680 446 / 9e-149 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10011238 [exp] 72 / 9e-13 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 71 / 1e-12 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 70 / 3e-12 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 59 / 3e-09 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10004562 [exp] 47 / 7e-05 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Potri.018G035000.1 pacid=42800745 polypeptide=Potri.018G035000.1.p locus=Potri.018G035000 ID=Potri.018G035000.1.v4.1 annot-version=v4.1 ATGACGAAGAAAGACAAAGAAGAGGAGAGAATTGAGAAGATAATTCGCGGTCTTCTTAAACTCCCTGAAAATCGTCGTTGCATTAATTGCAATAGCTTGG GACCACAATATGTTTGCACAACCTTCTTCACATTTGTTTGCACAGGCTGTAGTGGAATTCATCGGGAATTTACGCATAGAGTTAAATCGGTTTCGATGGC AAAATTTAACGCGGAAGAAGTTAGTGCTCTCCAAGCAGGAGGGAATGAGAGAGCGAGACAGATTTATTTGAAGGATTGGGATCCGCAGCGTAATCAGCTT CCTGATGGCAGTAATCTACAAAAGCTTCGAGATTTTATCAAGCATGTTTACGTGGATAGAAGATACACTGGAGAGAAAAGTGAAGAGAAACTCTCAAGGC TGAGATTGACTGACAAGGAGGAGTCTAGTGAGAACAGGAGGGTTGTTTTATATTCTGGTGGATCTAGAACTCTGAACTATGAAGATAGACAAGGGCAGAG TGAAAGATGTGGTTTTAGTGGAAGAACTGATGTCAAGACTTTCAGATATTATGATGATGAAAGAAGAAGTCCTCGTTATTCCCAAGAAAATACAAGATGT GGAGGTTTTAAGAAAAGTCCTGCTCGCTTTGAGGTTGTTGATGACAGGTTTCGAGATGACAAAATACGAAGTGTCAGGCAGACTGATGTCCACCTGTTTT CACCGACAGAGTCCAGGTTTGGGAACAGGTCATCTGACATTCAAAAGAATAATGCCCCTGTGGTACGCCCTCTTAAAGATATTCTGGGGGAGAATCTTCC GCCTCTACAGGTTGTTGAGCATTCTAAAGCACCCAACGGGAAGGATGCATCTGTTCACAGTCAGACGCCCGCTTCTTCCTGCCCTATGGCATCTGCTGAT GGGAATCCTGTGCAACAGAAAAGTCATAATTCAGAAAGCTCAGTTGATTTAAATGCTGATTCCAAGTCCTCCAATGCCGCGGCAGCACCAGTGGCACTGG AGAATCTTCCATCCAGTGAAGAAGGCAACTGCTCATATGAATCCTCTGGAAAGGAGAACATACCTCCGGTCCCAAAACCAAATATGTTGGAATTTTTACT GATGGAGTTGTCAGTTCCCTCAGTTATTCCTTTTGATAATACATCTGAAATACCAACTAATGATAACCCTTCATCAGCTACATCTGAAGAAAATATACTC ATGAGTAGTGGTGCTTCAGTAGCTGGGCCCTCAGGGCAGATGTTTGCATTACCAAGCAGTGGTGTTGATTCTGCAACTGATGCTTCTACAACTGCATCTG GAGACAACATGCCTGCTGGCAGTGTTTCACTACCTGTGGAGCAGATGTTAACACTGCCCAGTAGCGCTGGTGCTTCTACAGCCGTGTCTAGAGGCACCAT GACTGTGGGAAGTGTTTCACTAGCTGCACCTGTGGTGCAGACAGCAACTGCATCTGGGATCAGCCTGCCTGAAGGTGACCCTGTACCAGCCGTGCCCTTG GAGGAGACATTGACACTAATCGATGCTTTTGATGCATACATAGCCCCTTTAAATACTTCTTTGCCAGTGCAACCTTCTAATGCAGTTCCTCCACAAGCTG CGCTTGATAACAATGGTGACTCAACTTTCAAGGTTTTTGATGGGCAACAGATATCCACCATGCAACAACAGTCTTCTGCACTGCCTGCCAATAAAAGCTC TACTGGACAACAGACTACTAATACACCAGCTGGAGGGGTAAATGACCAGATCTGGACTTCATCAAATGTTCCTAATGCTCAGGGACCTCCAGATTTCCTC GGGGAATACCCTTCTCAAGATGTCTCGACACCAGCCCAAGAATCCAATTCTGATGCCAAATCCAAGCCTCTTGCATCAGAAACAAAATCTGGTGGAAGAA GGGAACTTCCAGTGGACCTTTTTACTACAACCATACCCACTCCAGGCCCAATTCCAGGCTGGCAAATTTCTCCACCTTATGGCATGGGATTTAACATGCA ATATTATCCTAATGCAACGCGTGTGCCAGCATATGCCAACACAACAAAATCAACGAACCCGTTCAATCTTAATGGAGAATCCACTTCGGTACAAGCCCCA CCTTTTCCTTCCATGGGAAATATGCACAGTGGTCTCCCAATGCATACTTCCGCATTGCCTCCACAGTCCCCACCCTTTGCATCAGCCATGCCTTATGGTG GATACATGGGACAACAAGCATACATGAATTTGCCTAATTCCGGACCACAAGGACCAGGCGACCTTGGCAGTGAGGGATTTCCTTTTGGGTCATTGGATAT GGCTCAACAACCAACCAACGAATACTTGCTCCCAGCCTCCTCAAGTTCTCTTCCTTCAAGGGGAGGCAATCCATTTGGATAG
AA sequence Show only first row Show all	>Potri.018G035000.1 pacid=42800745 polypeptide=Potri.018G035000.1.p locus=Potri.018G035000 ID=Potri.018G035000.1.v4.1 annot-version=v4.1 MTKKDKEEERIEKIIRGLLKLPENRRCINCNSLGPQYVCTTFFTFVCTGCSGIHREFTHRVKSVSMAKFNAEEVSALQAGGNERARQIYLKDWDPQRNQL PDGSNLQKLRDFIKHVYVDRRYTGEKSEEKLSRLRLTDKEESSENRRVVLYSGGSRTLNYEDRQGQSERCGFSGRTDVKTFRYYDDERRSPRYSQENTRC GGFKKSPARFEVVDDRFRDDKIRSVRQTDVHLFSPTESRFGNRSSDIQKNNAPVVRPLKDILGENLPPLQVVEHSKAPNGKDASVHSQTPASSCPMASAD GNPVQQKSHNSESSVDLNADSKSSNAAAAPVALENLPSSEEGNCSYESSGKENIPPVPKPNMLEFLLMELSVPSVIPFDNTSEIPTNDNPSSATSEENIL MSSGASVAGPSGQMFALPSSGVDSATDASTTASGDNMPAGSVSLPVEQMLTLPSSAGASTAVSRGTMTVGSVSLAAPVVQTATASGISLPEGDPVPAVPL EETLTLIDAFDAYIAPLNTSLPVQPSNAVPPQAALDNNGDSTFKVFDGQQISTMQQQSSALPANKSSTGQQTTNTPAGGVNDQIWTSSNVPNAQGPPDFL GEYPSQDVSTPAQESNSDAKSKPLASETKSGGRRELPVDLFTTTIPTPGPIPGWQISPPYGMGFNMQYYPNATRVPAYANTTKSTNPFNLNGESTSVQAP PFPSMGNMHSGLPMHTSALPPQSPPFASAMPYGGYMGQQAYMNLPNSGPQGPGDLGSEGFPFGSLDMAQQPTNEYLLPASSSSLPSRGGNPFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32630			ArfGap/RecO-like zinc finger d...		Potri.018G035000 [exp]	0	1
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.016G072300 [exp]	3.16	0.7555	E2Fa2-1,E2F3.2
AT2G20320			DENN (AEX-3) domain-containing...		Potri.002G255500 [exp]	13.19	0.7582
AT1G66910			Protein kinase superfamily pro...		Potri.017G116900 [exp]	18.89	0.7071
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G066600 [exp]	28.58	0.7100	CHR927
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Potri.004G230300 [exp]	34.64	0.7388	Pt-STI.4
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.005G146500 [exp]	44.38	0.7264
AT1G19600			pfkB-like carbohydrate kinase ...		Potri.005G229100 [exp]	48.98	0.7019
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Potri.003G021700 [exp]	60.24	0.7054
AT4G10890			unknown protein		Potri.007G058050 [exp]	63.57	0.6735
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.017G110400 [exp]	65.72	0.7135

Compare expression of checked genes

Potri.018G035000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.