Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24480 485 / 9e-167 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 473 / 1e-158 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 463 / 2e-153 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 431 / 2e-146 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 409 / 1e-137 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 387 / 2e-124 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 383 / 6e-124 LRX1 leucine-rich repeat/extensin 1 (.1) AT1G49490 383 / 1e-122 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 377 / 2e-119 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 366 / 8e-118 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G245600 [exp] 699 / 0 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 498 / 5e-171 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 496 / 1e-168 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 416 / 1e-140 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 405 / 2e-131 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 386 / 1e-127 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.010G083100 [exp] 372 / 1e-124 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 369 / 2e-117 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 355 / 4e-117 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017727 [exp] 484 / 4e-163 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 431 / 5e-146 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 372 / 4e-124 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 374 / 2e-122 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10039363 [exp] 371 / 9e-121 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 353 / 3e-116 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 352 / 5e-116 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10038631 [exp] 349 / 2e-115 AT4G13340 355 / 8e-120 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 331 / 9e-108 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 323 / 1e-101 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G035100.2 pacid=42800617 polypeptide=Potri.018G035100.2.p locus=Potri.018G035100 ID=Potri.018G035100.2.v4.1 annot-version=v4.1 ATGCATGTTCACTGGTGTCTGATGAAGGAAAAGACTCACATTCTTCCATTCTTCACCACTCTCACTCTCATTGGCTTCACCGCTGCCCAACACCACTCTT TTTCTAGCAATGCTGACCCTCGAGACTTACGAACAACACATATTGAACAGAACCAGAGACAGCTTTTATATTACAGAGAGGAGCTTGATGTAGAAGATGA GTATCTGATGTTACCACCTTGCCTCAAATTTGACAACCCAAGACTCAGAAGTGCCTACATTGCACTCCAAGCATGGAAGCAAGCCATCATCTCGGATCCC TTGAATCTCACATCCAACTGGGCGGGACCTGATGTTTGTAATTATACTGGTGTCTTCTGTGCCACAGCTCTTGATGATTCGTCGATCCAAACCGTTGCTG GGATTGATCTAAATCATGGCGACATGGCAGGCCACTTGGTCGAAGAGCTTGGACTCCTGACAGACATTGCCTTGTTTCACATCAACTCCAACAGATTCTG TGGGAGAGTACCGAAAACTCTCAAGAAACTAAAACTCCTCTACGAGTTGGATCTAAGCAACAATCGTTTTGCAGGCGGATTTCCTTGCGTTGTTCTTGAT CTTCCAAAGCTCAAGTATCTTGACCTTCGATTTAATGAGTTTGAAGGTGATTTGCCGAAAGAGCTGTTTAATAAGGATCTCGACGCAATATTCGTAAACC ACAACAGGTTTGCTCTTGAATTACCTAATAATTTTGGTAACTCACCTGTTTCTGTTATGGTTCTTGCGAATAATAAATTTCATGGATGTTTTCCGCCTAG TTTGGCTAACATGTCTAAGACCCTAAATGAAGTGATTCTTATGAACAATGGCTTGCGCTCATGTTTGCCTAAGGAGATAGGATTGCTAAAGAAAGTTACG GTTTTTGATGCAAGTAATAACAAACTCGTCGGCTCTTTGCCTGACACCATCGGAGACATGGAGAGTCTAGAACAGCTAAATGTGGCACATAATATGCTGT CAGGAGAAATCCATGATAGCGTGTGTTTGCTTCCACATCTGAAGAGCTTTAGTTATGCTTATAACTTCATCACTGGTGAGCCACCGGCATGTTTGGATTT GGAAGATTTTGATGATAGCAGGAATTGTTTCAGGGTAAGGCCCAAACAGAGATCAACACTGCAATGTAAAGTGTTCTTGTCTAGGCCAGTTCATTGTGAG GCTTTTAACTGTCACGAGTTTGATCCTTCTCCACCATCACAGCCGCCGCCGCCGCCACCCGTTACTTCACCTCCACCACCGGTTTATTCTCCACCACCAC CACCACCCCCTCCACTATCATCGCCCCCACCACCACCTTCACTAGTTCCTCCATCAGCACTTCCCTCACCTCCCCCTCCATCATCAATGCCGCCGCCACC CCCAATACACTGTGTTCCATCTCCACCATCACCTCCACCACCTCCTCCCTTCTACTCACCTCCACTATCCCCACCAAACTCACCTCCTAATTCACCTCCG CCGCCACCTTTTTATCATTCACCACCTCCGCCAAACTCATCTCCACCACCTCCTCCCTTCTACTCACCTCCACTACCCCCACCAAACTCACCTCCTAATT CACCTCCGCCGCCACCTATTTATCAATCACCACCTCCGCCAAACTCATCTCCACCACCTCCCTCATGTGCAGAACCTCCTCCACCTCCGTCACCACCGCC ATGCCAGGCGCAACCGCCTCCAATTCAATACTTGCCACCTCCACCTCCTCCAGTTTATAATCCACCACCACTGCCAGCTCCAGTGTATAATGGTCCATTG CCACCAATTACTGGCATATCTTATGCATCTCCACCACCTCCATCAATCAGCTAA
AA sequence Show only first row Show all	>Potri.018G035100.2 pacid=42800617 polypeptide=Potri.018G035100.2.p locus=Potri.018G035100 ID=Potri.018G035100.2.v4.1 annot-version=v4.1 MHVHWCLMKEKTHILPFFTTLTLIGFTAAQHHSFSSNADPRDLRTTHIEQNQRQLLYYREELDVEDEYLMLPPCLKFDNPRLRSAYIALQAWKQAIISDP LNLTSNWAGPDVCNYTGVFCATALDDSSIQTVAGIDLNHGDMAGHLVEELGLLTDIALFHINSNRFCGRVPKTLKKLKLLYELDLSNNRFAGGFPCVVLD LPKLKYLDLRFNEFEGDLPKELFNKDLDAIFVNHNRFALELPNNFGNSPVSVMVLANNKFHGCFPPSLANMSKTLNEVILMNNGLRSCLPKEIGLLKKVT VFDASNNKLVGSLPDTIGDMESLEQLNVAHNMLSGEIHDSVCLLPHLKSFSYAYNFITGEPPACLDLEDFDDSRNCFRVRPKQRSTLQCKVFLSRPVHCE AFNCHEFDPSPPSQPPPPPPVTSPPPPVYSPPPPPPPPLSSPPPPPSLVPPSALPSPPPPSSMPPPPPIHCVPSPPSPPPPPPFYSPPLSPPNSPPNSPP PPPFYHSPPPPNSSPPPPPFYSPPLPPPNSPPNSPPPPPIYQSPPPPNSSPPPPSCAEPPPPPSPPPCQAQPPPIQYLPPPPPPVYNPPPLPAPVYNGPL PPITGISYASPPPPSIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G035100 [exp]	0	1
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	4.58	0.9187
AT1G05370			Sec14p-like phosphatidylinosit...		Potri.010G088300 [exp]	5.65	0.9149
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	12.44	0.9045
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	12.68	0.9040
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	13.41	0.8952
AT5G59840			Ras-related small GTP-binding ...		Potri.001G236100 [exp]	13.56	0.9019	Pt-RAB8.2
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	13.63	0.9130
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	16.97	0.9064
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.004G059500 [exp]	16.97	0.8815
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Potri.005G141900 [exp]	17.32	0.8772	CYCD3.4

Compare expression of checked genes

Potri.018G035100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.