Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32650 778 / 0 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT5G46240 486 / 2e-164 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT2G26650 488 / 7e-163 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G18290 466 / 3e-156 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32500 457 / 8e-151 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G25600 455 / 1e-149 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G22200 415 / 2e-135 AKT3, AKT2/3 potassium transport 2/3 (.1) AT3G02850 286 / 8e-86 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 283 / 4e-85 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT1G15990 84 / 9e-17 ATCNGC7 cyclic nucleotide gated channel 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G245000 [exp] 1046 / 0 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 1025 / 0 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G071400 [exp] 505 / 3e-169 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.004G132200 [exp] 484 / 1e-162 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G249900 [exp] 485 / 3e-161 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G031600 [exp] 484 / 7e-161 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 424 / 4e-138 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.017G135400 [exp] 278 / 5e-83 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 274 / 2e-81 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037904 [exp] 861 / 0 AT4G32650 706 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Lus10007670 [exp] 859 / 0 AT4G32650 724 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Lus10043298 [exp] 485 / 3e-161 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 481 / 6e-160 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 470 / 1e-155 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10042831 [exp] 459 / 8e-153 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10028128 [exp] 459 / 1e-152 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10002529 [exp] 459 / 2e-151 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017766 [exp] 432 / 1e-146 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10015474 [exp] 438 / 2e-143 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF07885 [poplar] [flax] Ion_trans_2 Ion channel CL0030 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel
Representative CDS sequence Show only first row Show all	>Potri.018G035500.2 pacid=42800786 polypeptide=Potri.018G035500.2.p locus=Potri.018G035500 ID=Potri.018G035500.2.v4.1 annot-version=v4.1 ATGTCCGGATCGGAAACAAGGTCATCGTTGCCATTTCCGTTTCGAAGACGTTCGAGTGGAGACGTCACAAAGAACTTAGCCTCAGTTTCCAGCAGCCTCT TACCGGCTTTTGGAACTGTTGTTGATGATGGTTACTTACACCTGAAGAAGTATGTTATCGCTCCATATGATAGAAGATACCGGTGGTGGCAAACGTTCCT TGTGGTGTTGGTGGTATACTCAGCATGGGCATCTACTTTTGAACTGGCTTTTAAGAAAGCCGCTACCGGAGCACTTTTGCCCGTAGATTTGGTGGTTGAT GCCTTCTTTGCCGCTGATATTGTCTTAACTTTCTTTGTGGCTTATTTGGACAATTCGACCTATCTTCTTGTGGATGATCACAAGAAAATTGCAGCACGGT ATATCACCAGGTTATTGTTCCCCATGGACATAGCCTCAACTCTACCATTTCAAATCATTTACAGAATCATAACTGGCGAAATGCACGAAGGAGAGACCTT CGGTTTCCTCAACTTGCTGCGGCTTTGGCGACTCAGGCGTGTGGCTGAACTCTACAAAAGGCTAGAGAAAGACACACGCTTCAGCTACTTTTATACCAGA TTAATTAAACTAATCAGTGTCACACTATTTGCGGTTCACTCGGCAGGATGCTTCTACTACTGGCTTGCTGCTCATCATAAAACATCAGGCAATACATGGA TTGGAGTTCAGGTTAAAGATTTCAAACACAGAAGCATCTGGTTGGGTTACACCTACTCCATTTACTGGTCAATTGTCACTCTATCCACTGTTGGCTACGG AGACTTGCATGCAGTAAACACAGGAGAGAAAATTTTTAATATGTTTTACATGCTATTCAACATTGGCCTCACAGCTTATATAATCGGAAACATGACAAAT CTCATTGTCCATGCTGCGGTCCGTACTTTTGCTATGAGGAATGCCATCAATCAGATATTAAGATATGCAAGCAAGAATAGACTCCCAGAAGGTTTGAAAG AGCAAATGCTAGCACATATGCAACTCAAGTTCAAGACAGCAGAGTTGCAGCAAGAAGAAGTGTTAGAGGACTTACCAAAAGCAATCAGAACCAGCATTGC TCTACATCTTTTCCATGGTGTTGTTGCAAGCACCTACCTATTCAAAGGAGTTTCTGAAGATCTTCTTACCCAGTTGGTAACAGAAATGAAAGCAGAATAT TTTCCACCTAAGGTTGAAATTATTTTACAAAACGAGATTCCCACAGAGTTTTACATCTTAGTATCTGGAACGCTGGACGTGCTGGTGTACAAGAATGGAA CAGATCAGGTTTTGTCAAAGATAGGACCTTCAGATGTGGCAGGGGAAATTGGGGTTGTGTTCAACATCCCACAGCCTTTTACTATGAGGACCAAGAGACT TTCCCAGGTCATCCGGCTCAGTCATCATCATCTCAAGCAAATGGTGCAGCCCCATAGCGAAGATGGAAAAACAATTATCTCCAACTTCACTCAGTACATG AAGGACTTAAAACAAGAGATGCAACAAGAAATACCCTCTCTCAAGGAATTGCTGGGAGACACAACTGTAGAGCAAGCAACAGCAAATGAGGAGTTACCAA GTTCTGATGCAGTAAATTCTCAACGAGAAACAAATTTAGAAGGAACACCAGAAGATTCTACTTCATTAGCAAGCAAATATCCCACACGAGTGATAATACA TGGGCATCATCCAAATGAAAGTCCAACGGGGGACACAAACGGAAAGCTCATACATTTGCCCGACTCTATAGAAGATCTATTCAATGTAGCAGAAAAGAAG TTTGGCAAGCGTGGAAACAAAATTCTCATGGAGGATGGTTCAGAAGTGGAAGAATTGGATGCTTTAAGAGAGAATGATCGATTGTTTATTTTTGAATCTT AA
AA sequence Show only first row Show all	>Potri.018G035500.2 pacid=42800786 polypeptide=Potri.018G035500.2.p locus=Potri.018G035500 ID=Potri.018G035500.2.v4.1 annot-version=v4.1 MSGSETRSSLPFPFRRRSSGDVTKNLASVSSSLLPAFGTVVDDGYLHLKKYVIAPYDRRYRWWQTFLVVLVVYSAWASTFELAFKKAATGALLPVDLVVD AFFAADIVLTFFVAYLDNSTYLLVDDHKKIAARYITRLLFPMDIASTLPFQIIYRIITGEMHEGETFGFLNLLRLWRLRRVAELYKRLEKDTRFSYFYTR LIKLISVTLFAVHSAGCFYYWLAAHHKTSGNTWIGVQVKDFKHRSIWLGYTYSIYWSIVTLSTVGYGDLHAVNTGEKIFNMFYMLFNIGLTAYIIGNMTN LIVHAAVRTFAMRNAINQILRYASKNRLPEGLKEQMLAHMQLKFKTAELQQEEVLEDLPKAIRTSIALHLFHGVVASTYLFKGVSEDLLTQLVTEMKAEY FPPKVEIILQNEIPTEFYILVSGTLDVLVYKNGTDQVLSKIGPSDVAGEIGVVFNIPQPFTMRTKRLSQVIRLSHHHLKQMVQPHSEDGKTIISNFTQYM KDLKQEMQQEIPSLKELLGDTTVEQATANEELPSSDAVNSQRETNLEGTPEDSTSLASKYPTRVIIHGHHPNESPTGDTNGKLIHLPDSIEDLFNVAEKK FGKRGNKILMEDGSEVEELDALRENDRLFIFES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Potri.018G035500 [exp]	0	1
AT2G23450			Protein kinase superfamily pro...		Potri.014G038600 [exp]	12.40	0.8396
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.015G066200 [exp]	15.42	0.7813	Pt-CDPK1.4
AT1G68450		PDE337	PIGMENT DEFECTIVE 337, VQ moti...		Potri.010G123700 [exp]	31.30	0.7853
AT1G64300			Protein kinase family protein ...		Potri.003G137000 [exp]	37.37	0.7700
AT2G38790			unknown protein		Potri.008G025100 [exp]	49.89	0.7710
AT2G38790			unknown protein		Potri.008G025200 [exp]	57.18	0.7547
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.010G231500 [exp]	70.00	0.7453
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G062400 [exp]	84.14	0.7131
AT2G24720		ATGLR2.2	glutamate receptor 2.2 (.1)		Potri.018G096300 [exp]	86.68	0.7395
AT2G23770			protein kinase family protein ...		Potri.010G078700 [exp]	112.06	0.7263

Compare expression of checked genes

Potri.018G035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.