Plant FIBer expression Database

Potri.018G035700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25580 307 / 3e-100 unknown protein
AT1G18950 311 / 9e-98 DDT domain superfamily (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G244800
[exp]
766 / 0 AT5G25580 297 / 3e-96 unknown protein
Potri.012G072200
[exp]
318 / 1e-100 AT1G18950 691 / 0.0 DDT domain superfamily (.1)
Potri.015G067300
[exp]
306 / 5e-96 AT1G18950 665 / 0.0 DDT domain superfamily (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004259
[exp]
315 / 1e-98 AT1G18950 695 / 0.0 DDT domain superfamily (.1)
Lus10042167
[exp]
313 / 4e-98 AT1G18950 697 / 0.0 DDT domain superfamily (.1)
PFAM info
Representative CDS sequence
>Potri.018G035700.1 pacid=42801800 polypeptide=Potri.018G035700.1.p locus=Potri.018G035700 ID=Potri.018G035700.1.v4.1 annot-version=v4.1
ATGATCCATGGCGAGAAGGCAAAAGACGTTGTCGTTTTGAACGACGATCCCTATTTTGAATCGGAAATCGACAAGATTCGTGGCCGCTGGGAACTCGCTT
CGATTCTTAATTTTTTGAGCATATTTGAGCCAGTTCTTGGGGTTGATTTGAAGTTAACAGCAGAGGAGATTGAGAGTGGTCTTGTTAAGCCTAATAAATC
ACTTGCTCAGCTTCACGTTAAGCTATTAAAGGGGATACCACCTGTGAGTAACAAACTGAAAGCATCTGATGCATGGGTGACTGCACTTTGTAAGAAACTA
GCCACGTGGTGGCCATGGGTTGCTGAAGGTGAGTTACCACTGAAGGAAGCCAAAGGAGAGGAGATATCTGAATACAAGGAACTAGATCCAACTAATAGAT
TGCTGATTTTGAAAGCACTCTGTGAAATCAGAGCTGAACAAGATGATATTGCATCATATGTTAATACTTCCTTGAAAGATGGAACTGAAATTTCTTATTT
CCGGAAAGATAAGGTTGGGGGAGATGGAACTGCAATCTCTTACTGGTATGATGGAAGTTCTACCATTGGCCATAGATTATACAAGGAAGTAAACATGACC
AGGGCTAATATTAGAATGAAGGGTAAAGCATCAAAAAATCTGCCAGCTACCTGCTTGCAATGGGAAATACTTGCAACCAATCTCGAGGGATTTCAGAAAG
TTGTGAATGAACTCTCTTCTAGCAAAGTTGTGGCAGATGTTGCAGCTGGCAAGACTATTGAAACTGATGTCCTGCCTATTATTCAAAAATTTCAGAAGAA
GAAAGATAGGGCCCTCAAACAAAAAGAAAGGCAAGAAGAGCTCCTGAACAGTTTTAGATCCTACACTGCTGGGATTACTCGTTCCTGCCGCAGTCGCAGA
CCTATCAGTTATACATTTGATGATTATGACCGTGCGATTGATGAGGCTATAAAAATAACAAAGAAAAGGAACACTATTGAAGAGGAGAGCAATGACAGGA
AACATGTTAAGCAGGGAATTGCTTCTGATGGGGGTTCAAACATGGGCATAAATTCAACAGAAAGTCTTGGTGAAAAGGGTGATTCAGACATGAGTGCAGA
CTCCAAAGGTAATATTGAAAAGGGAAACTTCTCGGATAGTGAAGAAAGTGGCAAGCTTGATGAAGCAGGTAATGATGATGATGACAGCGATGATGATTAT
GATGACAAAATGGATTATGATAATGGGAATAGATCTGGCAAATCTGATGAAGAAAATGAAACTTTTGGTGGCAAGAACATTGCTCGGAAGTTTGGTTCTC
GTTGGAGTTCAAGACTTGCTGGAGTTGCAAGCCATCCTGTTGTGGAAGCTGGAAACTTTGGCACAAAGAATAGGTTGAGGCAAAGACCCATGCGTAACTC
TGCCCTGGACTCTATTAATGTGCTTGATTCAGATGATGAAACTTCGTCAAAACATACCAACAGCGAGATATCTGGACATGAAGATTTGTCTCCAGTATGT
AATTCAGAAGGGGTGAGTGACAGTTTGTAA
AA sequence
>Potri.018G035700.1 pacid=42801800 polypeptide=Potri.018G035700.1.p locus=Potri.018G035700 ID=Potri.018G035700.1.v4.1 annot-version=v4.1
MIHGEKAKDVVVLNDDPYFESEIDKIRGRWELASILNFLSIFEPVLGVDLKLTAEEIESGLVKPNKSLAQLHVKLLKGIPPVSNKLKASDAWVTALCKKL
ATWWPWVAEGELPLKEAKGEEISEYKELDPTNRLLILKALCEIRAEQDDIASYVNTSLKDGTEISYFRKDKVGGDGTAISYWYDGSSTIGHRLYKEVNMT
RANIRMKGKASKNLPATCLQWEILATNLEGFQKVVNELSSSKVVADVAAGKTIETDVLPIIQKFQKKKDRALKQKERQEELLNSFRSYTAGITRSCRSRR
PISYTFDDYDRAIDEAIKITKKRNTIEEESNDRKHVKQGIASDGGSNMGINSTESLGEKGDSDMSADSKGNIEKGNFSDSEESGKLDEAGNDDDDSDDDY
DDKMDYDNGNRSGKSDEENETFGGKNIARKFGSRWSSRLAGVASHPVVEAGNFGTKNRLRQRPMRNSALDSINVLDSDDETSSKHTNSEISGHEDLSPVC
NSEGVSDSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G25580 unknown protein Potri.018G035700
[exp]
0 1
AT2G28305 ATLOG1 LONELY GUY 1, Putative lysine ... Potri.004G212200
[exp]
18.22 0.6469
AT5G46330 FLS2 FLAGELLIN-SENSITIVE 2, Leucine... Potri.007G016700
[exp]
22.22 0.6801
AT3G61415 ASK21 SKP1-like 21 (.1.2) Potri.014G085400
[exp]
26.40 0.5765
AT5G14010 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc f... Potri.010G140700
[exp]
26.43 0.6517
AT1G68810 bHLH bHLH030 basic helix-loop-helix (bHLH) ... Potri.010G130000
[exp]
35.49 0.6029
AT3G13040 GARP myb-like HTH transcriptional r... Potri.014G000700
[exp]
42.80 0.6214
AT3G18520 HDA15, ATHDA15 histone deacetylase 15 (.1.2) Potri.012G060400
[exp]
48.88 0.6184
Potri.009G083702
[exp]
50.64 0.6186
AT2G41370 BOP2 BLADE ON PETIOLE2, Ankyrin rep... Potri.006G043400
[exp]
54.99 0.5967
AT3G52770 ZPR3 LITTLE ZIPPER 3, protein bindi... Potri.006G083201
[exp]
56.70 0.6108

Potri.018G035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.