Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20540 708 / 0 MEF21 mitochondrial editing factor 21 (.1) AT5G56310 406 / 2e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 387 / 6e-127 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 385 / 7e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44230 381 / 4e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 381 / 4e-125 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 372 / 3e-123 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 377 / 2e-122 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 371 / 1e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223900 [exp] 405 / 5e-136 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 402 / 3e-135 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 405 / 9e-135 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 405 / 2e-133 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 401 / 6e-133 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 400 / 8e-133 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G106500 [exp] 398 / 2e-132 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 397 / 8e-132 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 394 / 1e-131 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030125 [exp] 731 / 0 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10022124 [exp] 417 / 1e-144 AT2G20540 345 / 1e-116 mitochondrial editing factor 21 (.1) Lus10005987 [exp] 389 / 6e-130 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 386 / 2e-127 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019797 [exp] 373 / 1e-122 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 374 / 3e-122 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 373 / 8e-122 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 369 / 1e-121 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014113 [exp] 370 / 2e-121 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 372 / 1e-120 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.018G035900.1 pacid=42801900 polypeptide=Potri.018G035900.1.p locus=Potri.018G035900 ID=Potri.018G035900.1.v4.1 annot-version=v4.1 ATGGCAACAAGAATTGGTGCCTTGAAAATCAGAGAACTAGAGAATTTCTTTGTACCCATTTTGCAAAACTGCAAAAACATTGTAGAGTTGAAGAGCATCC ATGCTCATGTGATCAAGTACTCACTTTCGCAGAGCAGCTTCTTGGTGACAAAAATGGTAGATGTGTGTGATAAAACTGAGGATCTTGGTTACGCCAGCTT GCTTTTTAAGCAAGTGAAGGAACCAAATGGGTATTTATACAATGCAATGATAAGAGCTCACACACACAATAAAGTGTATGCTTTAGCAATCTTGTTTTAT AAGGAAATGCTAAGGCTAAAAGACCCGGAAAGTGAAAACCCAATTTTCCCTGACAGATTCACATTCCCCTTTGTTATTAAATCTTGTTCAGGGCTTGTAT GTTATAATCTAGGTAAGCAAGTCCATGCCCACTTGTGCAAGTTTGGGCCAAAGTCTAATATTACTATGGAGAATGCTCTAATTGATATGTACACAAAGTG TGCTAGTTTGTTGGACGCACATAAGGTGTTTGATGGTATGGTTGAAAGAGATGCAATTTCGTGGAATAGTATTATTTCTGGGCATGTTGGGGTGGGTCAG ATGAGAAAGGCAGGAGCTTTGTTTGATTTAATGCCTTACAGGACTATAGTATCTTGGACGGCGATGATTTCTGGTTACACGCGTCTCGGATCGTACGCCG ATGCGTTGTATGTGTTTCGTCAAATGCAAATTGTGGGCGTTGAGCCTGATGAGATTAGTATTATTTCTGTTTTGCCAGCGTGTGCGCAGCTAGGAGCTCT TGAAGTTGGGAAATGGATACATATGTATTGTGACAGAAATGGGTTGTTGAGGAAGACATCTATATGTAATGCTCTTATGGAAATGTACTCAAAATGTGGT TGCATTGGTCAAGCTTATCAATTGTTTGATCAAATGTCCAAAGGGGATGTGATTTCTTGGAGTACCATGATTGGAGGGCTCGCAAATCATGGGAAAGCTC GCGAAGCCATTGAATTGTTTAAAAGAATGAAGAAAGCAAAGATTGAACCAAATGGTATTACGTTTCTTGGTCTTCTATCAGCTTGTGCTCATGCTGGTTT TTGGAATGAGGGGTTAGCGTACTTCGATTCCATGAGTAAAGATTATCATATAGAGCCAGAGGTTGAGCATTATGGCTGCTTGGTCGATATTCTTGGACGT GCAGGGCGCCTTAGTCAGGCTCTTGATGTTATAGAGAAGATGCCTATGAAGCCTGATTCGAAGATATGGGGTTCATTATTAAGTTCTTGCAGGACTCATT CTAATCTTGATATTGCTATTATTGCAATGGAACACCTTGAAGAGCTTGAACCAGATGATACAGGAAATTATGTCTTGCTTTCCAATATATATGCAGATCT TGCCAAGTGGGATGGTGTGTCAAGGATGAGAAAGCTTATCAAAAGTAAGAGCATGAAGAAAACACCAGGGTCTAGTTTGATTGACATCAACAATGTGGTT CAAGAATTTGTATCATGGGATGATTCGAAGCCATTTTCAAGAGACATTTTCTGGTTGCTAGAGTTGCTGACTTCCCATCAGGACACAACTGATCCTCATT TAATTGAAATAATGCTTGAGGATGGGAGTGAATGTCTGGGTTAA
AA sequence Show only first row Show all	>Potri.018G035900.1 pacid=42801900 polypeptide=Potri.018G035900.1.p locus=Potri.018G035900 ID=Potri.018G035900.1.v4.1 annot-version=v4.1 MATRIGALKIRELENFFVPILQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFY KEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQ MRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCG CIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGR AGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDINNVV QEFVSWDDSKPFSRDIFWLLELLTSHQDTTDPHLIEIMLEDGSECLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20540		MEF21	mitochondrial editing factor ...		Potri.018G035900 [exp]	0	1
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	6.48	0.8673
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	11.13	0.8653
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Potri.015G084800 [exp]	12.12	0.8408
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	15.00	0.8444
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	16.85	0.8454
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	16.88	0.8482
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	19.79	0.8270
AT2G36980			Tetratricopeptide repeat (TPR)...		Potri.010G020500 [exp]	22.97	0.8212
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	24.37	0.8436
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.012G061300 [exp]	27.74	0.8312	ARP901,ARP4.2

Compare expression of checked genes

Potri.018G035900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.