Plant FIBer expression Database

Potri.018G036500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11470 209 / 4e-59 bromo-adjacent homology (BAH) domain-containing protein (.1)
AT3G15605 163 / 3e-44 nucleic acid binding (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G244000
[exp]
477 / 1e-162 AT5G11470 373 / 1e-119 bromo-adjacent homology (BAH) domain-containing protein (.1)
Potri.001G174700
[exp]
189 / 3e-55 AT3G15605 150 / 2e-41 nucleic acid binding (.1.2.3.4)
Potri.017G129900
[exp]
45 / 0.0001 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037903
[exp]
323 / 2e-103 AT5G11470 183 / 1e-49 bromo-adjacent homology (BAH) domain-containing protein (.1)
Lus10038628
[exp]
220 / 4e-64 AT5G11470 181 / 7e-49 bromo-adjacent homology (BAH) domain-containing protein (.1)
Lus10008527
[exp]
45 / 0.0002 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1)
Lus10008492
[exp]
44 / 0.0002 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0221 RRM PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
CL0221 PF01426 BAH BAH domain
Representative CDS sequence
>Potri.018G036500.4 pacid=42800896 polypeptide=Potri.018G036500.4.p locus=Potri.018G036500 ID=Potri.018G036500.4.v4.1 annot-version=v4.1
ATGGTAGAAGCAGAAAAAGTTGACCGCATTGAATTCAAGTGGTGTAAAAAGAGAGGAGTTGGTGGGAAAAAGAAAGATGTACAGTTTTATGAATCTTTCT
TTTATGATGGTGTGGACTATACTCTTTACGATTCTGTTTATATGTACAAGGAAGGTGAGCCAGAGCCTTATATTGGTAAGCTCATAAAGATATGGGAGAA
TGCTGACAAGACAAAGAAAGTGAAGGTTCTATGGTTTTTCCGTCCTCGTGAGATTTCAAATTATCTTGGAGATGAGAAGACTCTCAAGAATGAATTATTT
TTGGCCTCTGGTGAAGGTGTAGGCAACGCAAATGTTAATCCTTTGGAAGCAATTGCTGGAAAATGCAATGTGGTATGCAGTTCAAAGGATAGTAGAAATC
CACTACCATCAGATGAAGAACTTCAAGAGGCTGACTTTGTATTTTACCGTGCATTTGATGTTGGGAACTGTAGGATCTTGGATATGATAGATGAAAAAAT
TGCTGGGATTGAAGTGAAGTTCTTATTGAACAGAGTTGGTAATCAGAATTCCAGTGGTGTTCCAAAACTTGATTCGAACAAGAAAGAAGTCAGTGGAAAT
GCTGGGGTTACTGATGACACAAGGATTTTGGCCAAGAAAGAATCTTATCTTGGAGAGAAAGCTGCTTCTAGTTCAGGTGTACAGTTTGATGAAGTAGCTA
AAACCAATGAAAGGCAGGTTTTAGTTGAAGAGGAATTGAAAGTTGCCAAGGCTTCTGGTGACTTGGATGACAGATCATGTAAGAAAGCAAAGCTTGATGA
CTCGGCAAAAGCATCTCATGATAACAAGGTGAAAAGCACACAGAAATTAAGACATGATTCCAATGACAGTAGTTCCAAGGCTGTGGCTCAAATAACTCCT
GCTGCTGAAGATAAATCAAGGCCTAACCTTACTAAAGATCCCCAGGAGACCAACAATGCACTTTCCGAGAAGCCAAAGCCTGATGAGAAGCTAGCTAATG
GCAAGTTTCCTGAAGCATCTCTAAGACAGCCTTCAGAGGAGGGCAGTAAAACTAGCTATAAAATACAGGAACCCACTCGAAGGCCAGCAACTGATAGAAG
CAAGTGGTTTCGGGGACTTCCATGGGAAGAAACAATGCAAACTGCTCATGAGCAAGGAACTCTTGTCCTGCTACAGAATTTGGATCCGTCATATACTTCA
GCAGAAGTAGAGGATCTCATTTGGCAAGCCTTCAAGCAAAGTTGCACTGCGAAGATGATTCAAAGGACTGCACGTTCCAGCCCTCACTCTGGTCAGGCTT
TTGTTATATTCCAAAAAAGGGAAGTAGCTGAGATGGCAGTTGCAAAATTAGACGAAGTTTGCTTAATGCTATCAAATGGGAGGCCTCTGGTTGGTAGCAT
TGCTGCTCCTTGTTTCCCAGGAAAGCAGTCAACCTTTTTTGGTCATCTCACTATCAATAAACTTAGAATCCACATGCAGCGTGAGATGAAAGAAGCAGTA
TCTACTTCACATTGTTCTCAGCCCAATACACTTGAGTATGATATGGCAATGGAATGGTGCCTACTGCAAGATAGATCAGATCTAGCTTTGAGAAAGCTAC
GCCAGCAACAAGAGCAAGAGTTGAGAAAACTTAGGGCTACATTGAAGTCTAAATGA
AA sequence
>Potri.018G036500.4 pacid=42800896 polypeptide=Potri.018G036500.4.p locus=Potri.018G036500 ID=Potri.018G036500.4.v4.1 annot-version=v4.1
MVEAEKVDRIEFKWCKKRGVGGKKKDVQFYESFFYDGVDYTLYDSVYMYKEGEPEPYIGKLIKIWENADKTKKVKVLWFFRPREISNYLGDEKTLKNELF
LASGEGVGNANVNPLEAIAGKCNVVCSSKDSRNPLPSDEELQEADFVFYRAFDVGNCRILDMIDEKIAGIEVKFLLNRVGNQNSSGVPKLDSNKKEVSGN
AGVTDDTRILAKKESYLGEKAASSSGVQFDEVAKTNERQVLVEEELKVAKASGDLDDRSCKKAKLDDSAKASHDNKVKSTQKLRHDSNDSSSKAVAQITP
AAEDKSRPNLTKDPQETNNALSEKPKPDEKLANGKFPEASLRQPSEEGSKTSYKIQEPTRRPATDRSKWFRGLPWEETMQTAHEQGTLVLLQNLDPSYTS
AEVEDLIWQAFKQSCTAKMIQRTARSSPHSGQAFVIFQKREVAEMAVAKLDEVCLMLSNGRPLVGSIAAPCFPGKQSTFFGHLTINKLRIHMQREMKEAV
STSHCSQPNTLEYDMAMEWCLLQDRSDLALRKLRQQQEQELRKLRATLKSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11470 bromo-adjacent homology (BAH) ... Potri.018G036500
[exp]
0 1
AT2G41020 WW domain-containing protein (... Potri.006G032200
[exp]
4.47 0.8004
AT1G25360 Pentatricopeptide repeat (PPR)... Potri.002G027800
[exp]
5.00 0.8608
AT3G19510 HD HAT3.1 Homeodomain-like protein with ... Potri.009G093000
[exp]
12.00 0.7917
AT2G41720 EMB2654 EMBRYO DEFECTIVE 2654, Tetratr... Potri.006G049900
[exp]
12.24 0.7745
AT3G15690 Single hybrid motif superfamil... Potri.003G061400
[exp]
12.48 0.7483
AT5G66500 Tetratricopeptide repeat (TPR)... Potri.007G022500
[exp]
13.52 0.8071
AT4G08210 Pentatricopeptide repeat (PPR-... Potri.002G087400
[exp]
14.35 0.8072
AT2G17210 Tetratricopeptide repeat (TPR)... Potri.004G205900
[exp]
17.32 0.7339
AT3G23330 Tetratricopeptide repeat (TPR)... Potri.001G186500
[exp]
21.63 0.7986
AT3G14120 unknown protein Potri.001G165900
[exp]
23.23 0.7508

Potri.018G036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.