Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32700 2502 / 0 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT2G42270 144 / 8e-34 U5 small nuclear ribonucleoprotein helicase (.1) AT1G20960 139 / 2e-32 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT5G61140 120 / 7e-27 U5 small nuclear ribonucleoprotein helicase (.1.2) AT2G06990 109 / 1e-23 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G59760 108 / 2e-23 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G27730 102 / 3e-21 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT1G70070 100 / 8e-21 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT1G50840 86 / 2e-16 PolIA, POLGAMMA2 polymerase I A, polymerase gamma 2 (.1) AT3G46960 85 / 5e-16 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095500 [exp] 130 / 7e-30 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 127 / 1e-28 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G056501 [exp] 123 / 1e-27 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.001G348200 [exp] 119 / 2e-26 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Potri.006G078000 [exp] 105 / 2e-22 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 104 / 2e-22 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.004G228700 [exp] 99 / 2e-20 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 91 / 7e-18 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 90 / 2e-17 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022115 [exp] 2673 / 0 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10007673 [exp] 326 / 6e-98 AT4G32700 313 / 6e-94 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10007675 [exp] 200 / 2e-55 AT4G32700 81 / 4e-16 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10025168 [exp] 128 / 4e-29 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10016048 [exp] 125 / 3e-28 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10040524 [exp] 121 / 7e-27 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Lus10014551 [exp] 120 / 9e-27 AT3G27730 1354 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10042628 [exp] 116 / 9e-26 AT1G20960 921 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10032137 [exp] 116 / 1e-25 AT3G27730 1291 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10027599 [exp] 113 / 1e-24 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF00476 [poplar] [flax] DNA_pol_A DNA polymerase family A
Representative CDS sequence Show only first row Show all	>Potri.018G036600.1 pacid=42802174 polypeptide=Potri.018G036600.1.p locus=Potri.018G036600 ID=Potri.018G036600.1.v4.1 annot-version=v4.1 ATGTCTGATTCTCCTCGGACTCGCATCGATCAGTTTTTTGCGTCGAGGAAGAGGAAATCTTCGTCGCCGAATTTGAAGTCGGGAAGGATCGAAAAAGATG CAAGAAGCAAAGTAGTTGAAGGGTCCCCCAGTGCCAAAGGAACTTTGGATAATTACTTGGTGAACTCGAAGGATGATAACCGTGGGCGTGGTCTCTTGGT TAAAAGAAGCTTGGCATTGGGGATTGATGAAGTTTTAAATGAAGAAAAGGAGGAATCTTTTGTGTCTGGTCGATTGTGCGTGGGAAGTTGTGAAGGCGGC AAAGAGGTTCAGAAGGAAATGTCTCAAGGTTCGTCCGATGCAGGAAATGTGGGAAATATTGCGGTTGAAAGGGTTGTGAAGGGTTGCTTGGATCTGGGGA ATGGGGTGGAGAATTCGGAACTAAAACAGTTTGCTACTGATTTTTTGTCTCTGTATTGTGGTGAACTTCAATCAACTGCAACTTCACCTTCAAAGACAAA GTTGAATGACCATAAGCGAAATGGTGGTCCATTGCTAGTGGATGTTGATTATAAAACATCCAAAAAGAGGCTTTGCATGTCCAATCAGTTAAATTCTGAA GTTGAAACCCCTTGTCCAATCGAGAAGAAGCCAGAAGACAAGCAATCTGCTTTTGTTGTTAAAAATGGAGCATCTGTTTTCAATGCTTTTGGAGAGGTAG CTGTTGGTAATGATCCTGTTCAGCTTCAAGCAAGCTTGAGAAAATGCAACAAAATGGCTAACTCAACGGTAAATATGGCTGAATGCTGTACACCAGGATC ATCAATTTGTAGAGAACGGGGTAGTGATGGTCCCAAATCTACACGTGGAAGCTCTATCTTTTCACCAGGAGACGCATTTTGGAATGAAGCAATTCAAGTT GCTGATAGTTTATTTTCTGAAGCTGACAATCCTTTTGTCCAGGCAGTTGGAAATATCATTAATGGGAAGTCTGGCAACCTGTCACGGGAATTGTTAAACA AAGCCGGCAGCAGAGGTTGTTCATTGGAGTTTATAAGGAAGCATATGGAAAAAGTATCTCCACTGCCTGTCAAACAACTTGACTTACTATTTGAGGACAG GAACTTGGAAGTTAGCACCCCACCCTGTGCTAAAGATGATTCAAATGTGGACAGAAGCAGTGAAATATCTGAGCACGGTTCTATTAATCTAAAAAGCTTA AAAAATGCGAATATTGTAACATATCATCTCAAAGATGAGCCAAGAGAAGAGATGCATAAAGAAGAGGAGAAAACAACTGTGGATACAGAGACCACAAAGA AAGTGGATTTGCCAAATCAAGATGCCGATAGCATTATATATCATTTGCCAGTTAAAGAAACCAGGAATGTAATTGATAATAATGAGTGTGTTGAAGCTGG AACTCCTTCAAGTTTTGGGCCGCTCAAGGACCGGTTAGATCTTAGCAACTGGCTTCCTCTAGAAGTATGCAGCATATATAAGAGGAAAGGAATTTCAAAA CTGTATCCTTGGCAGGTTGATTGCCTTCAGGTGGATGGTGTTTTGCAGAGACGAAATCTTGTATATTGCGCGTCTACAAGTGCTGGTAAAAGTTTTGTTG CGGAAATTTTGATGTTGCGGCGGGTTGTATCAACTGGAAAGATTGCGCTTCTTGTACTTCCCTATGTATCAATTTGTGCAGAAAAGGCAGAACATCTGGA GGGCCTTCTGGAACCTCTTGGTAAGCATGTCCGGAGTTATTATGGCAACCAGGGTGGAGGAACACTTCCTAAAGATACTTCCGTAGCTGTCTGCACAATA GAGAAAGCAAACTCCTTAATAAACAGATTACTGGAAGAGGGTCGTCTATCAGAAGTTGGAATCATGGTGATAGATGAACTACACATGGTTGGTGATCAGA GCAGGGGTTACCTTTTGGAACTTCTGCTGACAAAGCTTCGTTATGCTGCTGGTGAAGGCAATTCAGAATCCAGCAGCGGAGAAAGCTCAGGTACAAGCAG TAAGGGTGATCCTGCTCATGGTCTGCAAATTGTTGGGATGAGTGCTACCATGCCCAATGTGGCAGCAGTTGCTGATTGGCTTCAAGCAGCACTATACCAG ACAAATTTCCGACCGGTTCCACTAGAAGAATACATTAAAGCTGGCAACACAATTTATGACAAGAAAATGGATATTGTTAGAACACTTTCAAGAGCAGCTG ACCTGGGTGGTAAAGATCCAGATCATATTGTGGAACTATGCAATGAGGTTGTTCAAGATGGACATTCAGTGTTAATATTCTGCTCTAGTCGAAAAGGATG TGAATCAACTGCGAGGCATGTTTCAAAATTTGTGAAGAAGTTTTCTATTAACATTCAGAATGAGAGCGAGTTTGGTGATATTACTTCAGCCATTGATGCA CTGCGAAGATGTCCTGCAGGATTGGATTCAACGTTGGAAGAAACTCTACCTTCCGGGGTTGCCTATCATCATGCTGGCTTGACGGTAGAGGAAAGAGAAA TTATTGAGACCTGTTATCGTAAAGGTCTTTTGCGCATCTTAACTGCTACATCTACCTTAGCTGCCGGGGTTAACCTGCCTGCTAGGAGGGTAATTTTTCG ACAACCCAGAATTGGTCGTGATTTCATTGACGGGACAAGGTACAGACAGATGGCTGGTCGAGCTGGTCGAACTGGAATAGATACTAAAGGGGAAAGTGTA CTGATTTGCAAACCAGAAGAGTTAAAAAGAATTATGGGACTTCTTAATGAAAGCTGTCCACCATTGCAGTCGTGTCTATCTGAAGATAAAAATGGAATGA CACATGCAATTTTAGAAGTTGTGGCTGGTGGGATTGTTCAAACTGCTAATGATATTCATCGTTATGTTAGATGTACTCTTCTCAATTCTACAAAACCGTT CAGGGATGTTGTGAAATCAGCACAGGATTCACTTAGGTGGTTGTGCCACAGAAAATTTCTTGAATGGAATGAAGATACTAAGTTATATGGCACAACACCT CTTGGACGTGCAGCTTTTGGCAGTTCTCTTTGTCCAGAAGAATCACTTATTGTGCTAGATGATCTTTCCAGAGCACGAGAAGGATTTGTGCTTGCGTCCG ATTTGCATTTAGTGTACTTAGTCACACCAATCAATGTTGATGTTGAGCCGAACTGGGAATTGTATTATGAAAGGTTTATGGAATTGTCTATCCTTGATCA GTCTGTTGGAAATCGAGTTGGAGTTTCAGAGCCATTTTTGATGCGGATGGCACATGGAGCACCTATGCGCAGCTTGAACAGATCAATAGATAATACAAAA GCCTTGCATGCCAGCAAGTATGAAAACCAATCTGGGGTTACAAACAAAAGTGCCATTTCAGATGATCAGACACTTAGGGTGTGCAAAAGATTTTATGTTG CTCTCATCTTGTCAAGACTTGTGCAGGAAGCACCTGTACCTGAGGTGTGTGAAGCTTTTAAAGTTGCTAGAGGCATGGTCCAATCCTTACAAGAGAATGC TGGAAGATTTGCTTCTATGGTTTCTGTGTTTTGTGAAAGACTTGGATGGCATGATCTTGAAGGTCTGGTTGCGAAGTTCCAAAATCGTGTTTCATTTGGA GTGCGAGCAGAGATTGTGGAGCTCACTAATATTCCATATGTTAAGGGTTCTCGAGCAAGGGCACTCTATAAAGCAGGGTTGCGTACACCTCAAGCTATTG CTGAAGCATCTATTCCTGAAATAGGCAAAGCACTTTTTGAATCTTCATCATGGTCTGCACAAGAAGGTTCAGCACAAAGACGCGTGCAATTGGGAATTGC GAAGAAAATCAAGAATGGTGCACGTAAAATTGTACTTGACAAAGCAGAAGAGGCAAGGGTTATTGCTTTTGCAGCATTCAAATCACTTGGATTCAATGTT CCACAATTTTCTCCGCCTTTGTTATCCAATGCTCCCGAAAATCTTGTTGAGCAAGGAAATGCAGGTACCTTGTTTGGAGATAAATCTAATATCATTTTGC ATGCGGACCAAAGAGATCATGCTTCATCTATGCTGTTTATAGAAGGTAGCAAGAATTCTGGTAAAGTTACAATGGCAACCGGAGAAGACAAACTAATGAA ACCAGTCAGTGTTGGATTGGTAGTTGCTGCAGAAGGAAACTCAAATGGTCCCATTCAGTGCTATATTGGTGCTGAAAATTCTACAGTACCAGCTAAGAAA TCTTCAAATCTTGGCACCGAGCTTTGTACTACTGGTGATCATAAGAATAGTGCAGAAACAATCCTCTCTGTACAATTTGGACATAGTGGTGATGGAACTG GGACCAATGACCGGATCACTGATACCAGAGTTCAGGGGCAGTGTAGTGGAGAGAATTTAAGTAGTGATAAAAAGGACAGTGCTTGCAAGAAGGGTCCTAC TAATGCAAGCAATATTTCTGGTGGATTTGATTCTTTCTTGGATCTCTGGGATGCTACCCAAGAATTCTATTTTGATATCCATTATAACAAGCGATCAGAA GTAAATTCTGTCAGCCTATTTGAAATACATGGTATTGCCATCTGCTGGGAAAACTCTCCTGTGTACTTCATCAATCTTCCTAAGGACCTACTGTGGTCTC ATAAGCAAAGGAATGATTCAACTCCCAGTCAATCTGGTGACAAAAATAATGTTCAACCACCTGAGAATTGGTTGGAGATAGTTCGGAAGAGATGGAACAA GATTGGAGAAATAATGGGAAAGAGAGGTGTCCTAAAATTTACTTGGAATTTGAAAATTCAACTTCAGGTGCTCAAGGGTGCTGTAGTTTCCATTCAGAGA TTTGGCTGCCCGAGTTTTCCAAGGAAAATATTCGGTCCTGAACTCATAGACAGTTCGCACTTAACATTATCCCCTATTAACATTGAAGAAGCAATCGACA TGTGCATTGTGGCATGGATTCTTTGGCCTGATGAGGAGAGAAGCTCCAATCCGAACTTGGAGAAGGAAGTCAAGAAAAGGTTATCAAGTGAGGCTGTGGC AGCTGCTAATCAGAATGGCAGGTGGAAGAATCAGATGCGAAGAGTTGCTCATAACGGCTGTTGTCGCCGCGTTGCACAAACAAGAGCCCTATGCTCTGGT CTTTGGAAGTTACTGACTTCTGAGGGACTCTTTGAAGCACTCAAGAACATTGAAATCCCGCTGGTGAATGTTCTTGCTGACATGGAGCTTTGGGGGATCG GTGTTGACATGGAGGGGTGCCTAAATGCACGCACTGTGCTGGGGAAAAGGCTAAGGTATCTTGAGAAGAAGGCTTATAAGCTGGCTGGCATGACATTTTC ACTGTACACAGCAGCAGACATTGCAAATATTCTATACAGACACTTGAAGCTTCCCATTCCAGAAGGACACAATAAGGGGAAAAAACATCCTAGCACTGAC AAGCATTGTTTGGATTTGTTAAGGCATGAGCATCCTATTGTTCCAGTCATCAGAGAGCACAGGACATTAGCAAAGCTTTTAAACTCGACACTGGGATCAA TCTGTTCACTGGCGAGGCTATCTATGGAGACTCAGAAGTACACACTACATGGCCATTGGCTCCAAACATCAACAGCTACTGGTCGGCTTTCAATTGAAGA ACCTAATCTTCAGTGCGTTGAACATGCAGTTGATTTCGAAATGAGTTCAGATAAAGAGGGGGATGATGCTGAACCTGAGCATTATAAAATAAATGCCCGT GACTTCTTTGTTCCTACTCAGGATAACTGGCTACTGTTAACAGCAGATTATTCTCAGATAGAATTGCGACTGATGGCACATTTCTCTAAAGACACTGCAT TAATTAAACTCCTTACCAAGCCACATGGCGATGTTTTCAACCTGATAGCCGCACGATGGACTGGGAAGCCTGAAGCTTCTGTCAGCTCAGTTGAGCGAGA TCAGACCAAAAGGATGGTCTATGGAATTCTTTATGGAATGGGTGCTAACACTCTTGCTGAACAACTGGATTGTAGCTCTGATGAAGCTGCAGAAAAAATT AAAAGCTTCAAAAGTTCTTTTCCTGGGGTTGCTTCCTGGCTCCATGAAGCAGTTGCATCTTGCCGTGAAAAAGGATACGTGGAGACCATTAAGGGAAGAA AACGGTTCTTGTCGAAAATAAAATTCGGAAATAGTGAAGAAAAATCAAAAGCTCAGAGACAAGCAGTTAATTCTATCTGTCAGGGATCTGCTGCTGACTT AATCAAGATTGCAATGATAAATATACACTCTCTGATTGTTGATGGAGTTGGTAGGCCAGAGTCTAGCTCTTTACATGCAAACAAGTTTCACATGCTGAAG GGCCAATGCCGAATTCTATTACAGGTACATGACGAGCTAGTGCTGGAAGTCGATCCATCCTTGATCAATGAAGCTGCAGTGCTGTTACAAATGAGCATGG AAGATGCTGCTTCTCTTCTTGTTCCTTTGCATGTCAAACTAAAAGTTGGAAGAACCTGGGGCTCTTTAGAGCCTTTCCTTGCTGATCAACACGTAAATGA AGTTCTTATGCCTGAATCATGA
AA sequence Show only first row Show all	>Potri.018G036600.1 pacid=42802174 polypeptide=Potri.018G036600.1.p locus=Potri.018G036600 ID=Potri.018G036600.1.v4.1 annot-version=v4.1 MSDSPRTRIDQFFASRKRKSSSPNLKSGRIEKDARSKVVEGSPSAKGTLDNYLVNSKDDNRGRGLLVKRSLALGIDEVLNEEKEESFVSGRLCVGSCEGG KEVQKEMSQGSSDAGNVGNIAVERVVKGCLDLGNGVENSELKQFATDFLSLYCGELQSTATSPSKTKLNDHKRNGGPLLVDVDYKTSKKRLCMSNQLNSE VETPCPIEKKPEDKQSAFVVKNGASVFNAFGEVAVGNDPVQLQASLRKCNKMANSTVNMAECCTPGSSICRERGSDGPKSTRGSSIFSPGDAFWNEAIQV ADSLFSEADNPFVQAVGNIINGKSGNLSRELLNKAGSRGCSLEFIRKHMEKVSPLPVKQLDLLFEDRNLEVSTPPCAKDDSNVDRSSEISEHGSINLKSL KNANIVTYHLKDEPREEMHKEEEKTTVDTETTKKVDLPNQDADSIIYHLPVKETRNVIDNNECVEAGTPSSFGPLKDRLDLSNWLPLEVCSIYKRKGISK LYPWQVDCLQVDGVLQRRNLVYCASTSAGKSFVAEILMLRRVVSTGKIALLVLPYVSICAEKAEHLEGLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTI EKANSLINRLLEEGRLSEVGIMVIDELHMVGDQSRGYLLELLLTKLRYAAGEGNSESSSGESSGTSSKGDPAHGLQIVGMSATMPNVAAVADWLQAALYQ TNFRPVPLEEYIKAGNTIYDKKMDIVRTLSRAADLGGKDPDHIVELCNEVVQDGHSVLIFCSSRKGCESTARHVSKFVKKFSINIQNESEFGDITSAIDA LRRCPAGLDSTLEETLPSGVAYHHAGLTVEEREIIETCYRKGLLRILTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDTKGESV LICKPEELKRIMGLLNESCPPLQSCLSEDKNGMTHAILEVVAGGIVQTANDIHRYVRCTLLNSTKPFRDVVKSAQDSLRWLCHRKFLEWNEDTKLYGTTP LGRAAFGSSLCPEESLIVLDDLSRAREGFVLASDLHLVYLVTPINVDVEPNWELYYERFMELSILDQSVGNRVGVSEPFLMRMAHGAPMRSLNRSIDNTK ALHASKYENQSGVTNKSAISDDQTLRVCKRFYVALILSRLVQEAPVPEVCEAFKVARGMVQSLQENAGRFASMVSVFCERLGWHDLEGLVAKFQNRVSFG VRAEIVELTNIPYVKGSRARALYKAGLRTPQAIAEASIPEIGKALFESSSWSAQEGSAQRRVQLGIAKKIKNGARKIVLDKAEEARVIAFAAFKSLGFNV PQFSPPLLSNAPENLVEQGNAGTLFGDKSNIILHADQRDHASSMLFIEGSKNSGKVTMATGEDKLMKPVSVGLVVAAEGNSNGPIQCYIGAENSTVPAKK SSNLGTELCTTGDHKNSAETILSVQFGHSGDGTGTNDRITDTRVQGQCSGENLSSDKKDSACKKGPTNASNISGGFDSFLDLWDATQEFYFDIHYNKRSE VNSVSLFEIHGIAICWENSPVYFINLPKDLLWSHKQRNDSTPSQSGDKNNVQPPENWLEIVRKRWNKIGEIMGKRGVLKFTWNLKIQLQVLKGAVVSIQR FGCPSFPRKIFGPELIDSSHLTLSPINIEEAIDMCIVAWILWPDEERSSNPNLEKEVKKRLSSEAVAAANQNGRWKNQMRRVAHNGCCRRVAQTRALCSG LWKLLTSEGLFEALKNIEIPLVNVLADMELWGIGVDMEGCLNARTVLGKRLRYLEKKAYKLAGMTFSLYTAADIANILYRHLKLPIPEGHNKGKKHPSTD KHCLDLLRHEHPIVPVIREHRTLAKLLNSTLGSICSLARLSMETQKYTLHGHWLQTSTATGRLSIEEPNLQCVEHAVDFEMSSDKEGDDAEPEHYKINAR DFFVPTQDNWLLLTADYSQIELRLMAHFSKDTALIKLLTKPHGDVFNLIAARWTGKPEASVSSVERDQTKRMVYGILYGMGANTLAEQLDCSSDEAAEKI KSFKSSFPGVASWLHEAVASCREKGYVETIKGRKRFLSKIKFGNSEEKSKAQRQAVNSICQGSAADLIKIAMINIHSLIVDGVGRPESSSLHANKFHMLK GQCRILLQVHDELVLEVDPSLINEAAVLLQMSMEDAASLLVPLHVKLKVGRTWGSLEPFLADQHVNEVLMPES

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Potri.018G036600 [exp]	0	1
AT3G10650		AtNUP1	unknown protein		Potri.010G244700 [exp]	1.00	0.9313
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	5.00	0.8906
AT1G72890			Disease resistance protein (TI...		Potri.011G012901 [exp]	5.65	0.8753
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Potri.013G068400 [exp]	6.32	0.8874
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Potri.006G119600 [exp]	7.54	0.8692
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.002G258766 [exp]	7.74	0.8772
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	9.94	0.8800
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121601 [exp]	16.06	0.8411
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.006G078000 [exp]	17.74	0.8457	HEN2.1
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.001G438300 [exp]	18.16	0.8260

Compare expression of checked genes

Potri.018G036600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.