Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25610 307 / 2e-101 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 155 / 2e-44 ATUSPL1 unknown seed protein like 1 (.1) AT1G60390 140 / 3e-36 PG1 polygalacturonase 1 (.1) AT1G70370 131 / 4e-33 PG2 polygalacturonase 2 (.1.2) AT1G23760 130 / 1e-32 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243700 [exp] 447 / 6e-157 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 446 / 8e-156 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 236 / 1e-74 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 233 / 1e-73 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 233 / 1e-73 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 233 / 4e-73 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.009G114600 [exp] 171 / 5e-50 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1) Potri.004G153100 [exp] 166 / 5e-48 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114300 [exp] 165 / 2e-47 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007674 [exp] 377 / 1e-128 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10022114 [exp] 374 / 2e-127 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10003263 [exp] 322 / 4e-108 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10026333 [exp] 187 / 7e-57 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10007011 [exp] 183 / 1e-54 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10032324 [exp] 176 / 5e-52 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10006665 [exp] 174 / 2e-50 AT1G49320 177 / 3e-53 unknown seed protein like 1 (.1) Lus10006667 [exp] 169 / 5e-49 AT1G49320 196 / 4e-61 unknown seed protein like 1 (.1) Lus10006555 [exp] 153 / 1e-45 AT5G25610 122 / 8e-35 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10042335 [exp] 150 / 3e-42 AT1G49320 184 / 6e-57 unknown seed protein like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [poplar] [flax] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Potri.018G036700.1 pacid=42800551 polypeptide=Potri.018G036700.1.p locus=Potri.018G036700 ID=Potri.018G036700.1.v4.1 annot-version=v4.1 ATGGAGTTCCATGTCCCACGCATTCTTGCTTTCCTCGCTTTTGCACTTGTGGTAAGCCATGCGGCCTTGCCACCTGAACTTTACTGGAAAAATGTGCTGC CCAACACTCCTATGCCAAAATCTGTCAGAGATCTTCTACACCCAGACTTGGTGGAGGACAAGAGCACTTCTGTTGCTGTAGGGAAGGGTGGAGTGGATGT TGATGCAGGAAAAGGAAAGCCAGGAGGAACTGCTGTAAATGTAGGGAAGGGTGGAGTGGATGTTGATGCAGGAAAAGGAAAGCCAGGAGGAACTGCTGTC AATGTAGGCAAGGGTGGAGTGAATGTAAACTCTGGGAAAGGAAAGCCTGGAGGAACTGCTGTAAATGTTGGAAAGGGTGGAGTGAATGTAAACTCAGGGA AAGGAAAGCCAGGCGGCGGGACACATGTCAGCGTGGGAGGCAAAGGTGTTGGTGTCAACACCGGAAAGCCTGGGAAGGGAACCCAAGTTGGTGTTGGCAA AGGCGGAGTGTCGGTGGGCACAGGACACAAGGGCAAGCCCGTAATTGTTGGGGTACACCCCGGGCCAAGCCCATTCCTATACAAGTATGCGGCCACCGAG ACTCAACTACACCATGACCCTACTGTAGCCCTTTTTTTCTTGGAGAAAGACATGCATCCAGGAAAAATGATGAACTTGCAGTTCACTGAAAACACTAACA CAGCAACTTTCTTACCTCGCCAGGTTACTGATTCAATACCCTTTTCATCTAACAATTTGCCAGAAATCTACAGTGAGTTTTCAGTCAAACCTGGATCAAC AGAAGCTGAGGTAATGAAGGAAACAATCAAGGAATGTGAAAACCCTGGAATTGAAGGAGAGGAAAAAGAATGCGCAACTTCACTGGAGTCAATGATCGAC TTCAGCACTTCCAAACTAGGAAAGAATGTTCAGGCAATCTCCACAGAAGTGGAAAGCACCCAGATGCAAAAGTATACAATTAAGACCGGAGTAAAGAAGA TGGCAGGAGACAAATCTGTAGTGTGCCACAAGCAGAACTATGCATACGCCGTCTTTTACTGCCATGCAACACAAACCACGAGGGCTTACGCGGTTCCATT GGAGGGTGCTGATGGAACAAATGCTAAAGCTGTAGCAGTGTGCCACACAGATACATCTGCATGGAACCCAAAGCATTTGGCTTTCCAGGTGCTCAATGTT AAGCCAGGAACCGTACCAGTCTGCCATTTCCTTCCTCAGGATCATGTTGTGTGGCTTCCCAACTAG
AA sequence Show only first row Show all	>Potri.018G036700.1 pacid=42800551 polypeptide=Potri.018G036700.1.p locus=Potri.018G036700 ID=Potri.018G036700.1.v4.1 annot-version=v4.1 MEFHVPRILAFLAFALVVSHAALPPELYWKNVLPNTPMPKSVRDLLHPDLVEDKSTSVAVGKGGVDVDAGKGKPGGTAVNVGKGGVDVDAGKGKPGGTAV NVGKGGVNVNSGKGKPGGTAVNVGKGGVNVNSGKGKPGGGTHVSVGGKGVGVNTGKPGKGTQVGVGKGGVSVGTGHKGKPVIVGVHPGPSPFLYKYAATE TQLHHDPTVALFFLEKDMHPGKMMNLQFTENTNTATFLPRQVTDSIPFSSNNLPEIYSEFSVKPGSTEAEVMKETIKECENPGIEGEEKECATSLESMID FSTSKLGKNVQAISTEVESTQMQKYTIKTGVKKMAGDKSVVCHKQNYAYAVFYCHATQTTRAYAVPLEGADGTNAKAVAVCHTDTSAWNPKHLAFQVLNV KPGTVPVCHFLPQDHVVWLPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.018G036700 [exp]	0	1
AT2G16630			Pollen Ole e 1 allergen and ex...		Potri.004G169200 [exp]	2.44	0.9621
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.009G069100 [exp]	3.16	0.9406
AT1G52855			unknown protein		Potri.013G145100 [exp]	3.74	0.9355
AT3G05975			Late embryogenesis abundant (L...		Potri.016G142200 [exp]	4.47	0.9481
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Potri.017G082500 [exp]	14.28	0.9099	Pt-MYB94.1
					Potri.004G050700 [exp]	15.90	0.9155
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G180300 [exp]	17.83	0.9481	CER1.1
AT5G26230		MAKR1	membrane-associated kinase reg...		Potri.010G090500 [exp]	18.33	0.9053
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.007G139600 [exp]	20.78	0.9457
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	20.85	0.8982	Pt-LACS2.2

Compare expression of checked genes

Potri.018G036700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.