Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25630 694 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G21222 600 / 0 protein kinase family protein (.1) AT1G63130 220 / 5e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 219 / 4e-62 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G12300 216 / 1e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G16880 216 / 9e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 212 / 1e-60 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 212 / 2e-60 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62930 211 / 8e-60 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 211 / 1e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081700 [exp] 725 / 0 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.006G242600 [exp] 225 / 3e-70 AT5G25630 54 / 7e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G032600 [exp] 234 / 2e-68 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 231 / 1e-66 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 223 / 4e-64 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 222 / 9e-64 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G047000 [exp] 219 / 3e-63 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034300 [exp] 214 / 1e-62 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 220 / 2e-62 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023650 [exp] 679 / 0 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10034924 [exp] 655 / 0 AT5G21222 599 / 0.0 protein kinase family protein (.1) Lus10013283 [exp] 224 / 2e-64 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10014245 [exp] 220 / 3e-63 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10007468 [exp] 213 / 6e-60 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009465 [exp] 214 / 7e-60 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10008593 [exp] 208 / 5e-59 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10001284 [exp] 209 / 1e-57 AT1G31840 645 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027916 [exp] 207 / 1e-57 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 206 / 2e-57 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.018G037200.3 pacid=42801055 polypeptide=Potri.018G037200.3.p locus=Potri.018G037200 ID=Potri.018G037200.3.v4.1 annot-version=v4.1 ATGGGAGAATTTGATAAGGAGAGTGCTTTTCCGAGAACCTCCAAGAAAAATCAAGCAGGAACAGCCACTATCAAGAAACGATGGGTGGCATTACCAGTGA AGGAGAATAATCCAGATCATATGAATCAACTTCGTCCTGCTTCAGAGTCTATGGAGTTCCAAAGGGCAATCGGTTGCAAATTCTGCACGACCAAAGATAG TTGCAGAACTGTGCGATCAAGGACAAAACTAATGAACTTTCTGGTAGAAAAGGGAAAGCCACAAGAAGCAGAGTCCATTTTTTATAGTTTAATTGAAGGA GGGCATAAACCATCTCTAATATCGTACACAACTCTCTTGGCTGCCTTGACCATGCAGAAGCGCTTTGACTCCATATATTCAATTATCTCACAGGTGGAAG AAAATGGAATGAATCCTGATTCTATATTTTTTAATGCTGTTATTAATGCTTTTTCTGAATCTGGGAACATGGAGAGTGCCATGGAAACCTTTTGGAAGAT GCAAGAAAATGGAATGAAACCCACTACAAGTACTTATAACACCTTAATCAAAGGGTATGGAATTGCCGGTAAACCTGAAGAGTCTGTGAAACTACTAGAA CTTATGTCCCAAGAGGGAAATGTGAAACCCAATCTCAGGACTTATAATGTTCTTGTCAGAGCATGGTGTAACAAGAAGAGAATTACAGAGGCATGGAATG TAGTTTATAAGATGATAGCTTCTGGGATACAACCTGACGTGGTTACTTACAACACTATAGCAACTGCCTATGCTCAGAAAGGAGCGCTGGATCAGGCTGA AGGTGTAATCTTAGAGATGCAGAATAATGGTGTGCAGCCCAATGAGCGAACTTGTGGCATCATCATGAGTGGTTACTGTAAAGAAGGGAGAATAAGGGAG GCGTTGAGGTTTGCATACAGGATGAAGGAACTTGGCATCCATCCTAATCTTGTGATATTTAATTCACTGATCAAAGGCTTTGTGGCCATTATGGACAGAG ATGGAGTTGATGAGGTTCTCAACTTGATGGAAGAATTTGGAGTAAAACCAGATGTCATAACATTCAGTACCATCATGAATGCGTGGAGCACTGCAGGATT TATGGAGAAGTGCAGGGAAATCTTTGATGATATGGTGAAAGCGGGCATAGAACCTGATGCACATGCATACAGCATTCTTGCAAAAGGTTATGTGCGTGCA CAAGAACCAGAAAAAGCTGAAGAACTCCTGACTACCATGATTAAATCTGGATTCCAGCCAAATGTTGTAATTTTCACAACTGTTATCAGCGGCTGGTGCA GTGCTGGCAAAATGGACTATGCAGTTAGGGTTTTTGACAAGATGTGTCAACGTGGAATTTCTCCTAATTTGAAGACCTTTGAGACCCTAATTTGGGGATT CGCTGAAGCCAGGCAACCATGGAAGGCAGAAGAAATTCTCCAGATTATGACAGAATTTGAGGTTCAGCCTGAGAAATCAACCATGTTGCTTGTTGCTGAA GCATGGCGTGCTACTGGAATGACAAAAGAGGCAAATAGACTTCTTGGCACGAGGAACAGAAAGGAAATGACCAATCGAAAAGAGGCGTTGGAAAAAGAAA TACCTGTTGGAAACCTAGAGAAGCTGTATCAAAAGCAAACAGAAGGTGTCCTGTATTCCAATATCTTGCAGATACCAAGTACAGTTACAAGTGACATGAA AGGGTCTCCTGCGCCTCTTAGAAAAGGTAGGATGGTGTTGAGAGATGCTGATTTTCCGGTGGAGTGCTCATGGCTTGCCACAGGATCCATGTCTCTTTCT CATAGTTGTAAATTTGGGTTAAGGCTACCAATTATCTGCCGCAAGCAGTCTCAGGCGCAGCATGGTATGTATGGTCAGCTTGCACAGTCATGTACAGCGG TGTTCTTGAACTGA
AA sequence Show only first row Show all	>Potri.018G037200.3 pacid=42801055 polypeptide=Potri.018G037200.3.p locus=Potri.018G037200 ID=Potri.018G037200.3.v4.1 annot-version=v4.1 MGEFDKESAFPRTSKKNQAGTATIKKRWVALPVKENNPDHMNQLRPASESMEFQRAIGCKFCTTKDSCRTVRSRTKLMNFLVEKGKPQEAESIFYSLIEG GHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLE LMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIRE ALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRA QEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEEILQIMTEFEVQPEKSTMLLVAE AWRATGMTKEANRLLGTRNRKEMTNRKEALEKEIPVGNLEKLYQKQTEGVLYSNILQIPSTVTSDMKGSPAPLRKGRMVLRDADFPVECSWLATGSMSLS HSCKFGLRLPIICRKQSQAQHGMYGQLAQSCTAVFLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25630			Tetratricopeptide repeat (TPR)...		Potri.018G037200 [exp]	0	1
AT5G19940			Plastid-lipid associated prote...		Potri.006G276400 [exp]	5.09	0.9668
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Potri.003G031800 [exp]	8.94	0.9520
AT1G74470			Pyridine nucleotide-disulphide...		Potri.012G068801 [exp]	9.79	0.9582
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.017G118900 [exp]	15.49	0.9559
AT1G50450			Saccharopine dehydrogenase (....		Potri.009G050100 [exp]	15.87	0.9479
AT1G03630		PORC ,POR C	protochlorophyllide oxidoreduc...		Potri.013G135500 [exp]	16.37	0.9569	Pt-POR.2
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Potri.014G166800 [exp]	18.02	0.9382	APG1.2
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.005G069100 [exp]	18.57	0.9271
AT5G01920		STN8	State transition 8, Protein ki...		Potri.016G138500 [exp]	19.49	0.9512
AT2G05310			unknown protein		Potri.014G167300 [exp]	23.87	0.9425

Compare expression of checked genes

Potri.018G037200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.