Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25752 347 / 1e-120 ATRBL11 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, rhomboid-like protein 11 (.1) AT5G25640 113 / 2e-31 Rhomboid-related intramembrane serine protease family protein (.1) AT5G07250 56 / 1e-08 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 54 / 3e-08 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G52580 52 / 2e-07 ATRBL5 RHOMBOID-like protein 5 (.1) AT3G53780 50 / 9e-07 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT2G29050 50 / 1e-06 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G63120 49 / 1e-06 ATRBL2 RHOMBOID-like 2 (.1) AT1G25290 42 / 0.0003 ATRBL10 RHOMBOID-like protein 10 (.1.2) AT4G23070 41 / 0.0006 ATRBL7 RHOMBOID-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086300 [exp] 58 / 3e-09 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 53 / 1e-07 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.015G142000 [exp] 52 / 1e-07 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 52 / 2e-07 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.001G108700 [exp] 49 / 1e-06 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.009G031900 [exp] 49 / 1e-06 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 48 / 3e-06 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.017G112900 [exp] 42 / 0.0003 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022131 [exp] 364 / 3e-127 AT5G25752 334 / 6e-116 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, rhomboid-like protein 11 (.1) Lus10011680 [exp] 360 / 1e-125 AT5G25752 333 / 1e-115 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, rhomboid-like protein 11 (.1) Lus10023789 [exp] 52 / 2e-07 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10024497 [exp] 52 / 2e-07 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10003971 [exp] 52 / 2e-07 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10017840 [exp] 51 / 4e-07 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10027436 [exp] 50 / 9e-07 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10005464 [exp] 49 / 3e-06 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 48 / 5e-06 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10000628 [exp] 45 / 6e-05 AT5G38510 335 / 3e-112 Rhomboid-related intramembrane serine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.018G037300.2 pacid=42800479 polypeptide=Potri.018G037300.2.p locus=Potri.018G037300 ID=Potri.018G037300.2.v4.1 annot-version=v4.1 ATGGGGCAGTTTCAGTTCCCTTTCCAGCAAAAAATTTCAACACTAAAACCTTGTTGTTACTCCTTCGCATCATCCCCTATCGCTTCTCATTACCCTTTCC CAAGTTCCCTTACCGTTCCTCCTCGTCGCTTTTCTCATCCAAAGCTCACCGTGCCCACTAATTCTTCATATGTCCTTCGCTCTCTCCGTGCCGCCCCGTC TCGTTTTGTTTGCAAAAGCAATGGATCAGATATGACAAGGCAGCTGGAACTTGGGAAGCCAGAAGAAAGAAGGAAACCGGAGAAGCGCGTTAATGGGATA TTCTGGATTATACTTATCAATCTCGGAATGTTTGTAGCAGATCACATTTTTCAGGTTCGCAGCATTAAATCTCTTTACTTGTATCATAATTGGCCTGCTT GGTACCAGTTTGTGACAGCAACATTCTGCCATGCTAGCTGGGAACATCTTTCAAGCAATCTTTTTTTCTTGTACATTTTCGGGAAGCTTGTTGAAGAAGA GGAAGGAAACTTTGCATTGTGGCTCTCTTATATTCTTACGGGTGTTGGAGCAAATCTTGTTTCATGGTTAGTTTTGCCCAGAAATGCAGTTTCTGTTGGA GCTTCTGGTGCTGTTTTTGGACTATTTGCAATCAGTGTCCTTGTAAAGATAACCTGGGATTGGAGGAAGATTCTTGAAGTGCTTATATTGGGCCAGTTTG TTATAGAGAAGGTAATGGAGGCAGCTCAAGCGTCAGCAGCTATGACAGGCCCTTTTCGTGGAGGCTACCCAGTGCAGACTGTCAATCACATTGCGCATCT CTCTGGTGCCCTTGTTGGTGTGGTTTTGGTATGGCTTGTCAGCAGAATTCCTTCTCCTCCAGATCATGAAGGGCAAACTTCGCAAGGGAAATCAGGCAAA ATTCGATAG
AA sequence Show only first row Show all	>Potri.018G037300.2 pacid=42800479 polypeptide=Potri.018G037300.2.p locus=Potri.018G037300 ID=Potri.018G037300.2.v4.1 annot-version=v4.1 MGQFQFPFQQKISTLKPCCYSFASSPIASHYPFPSSLTVPPRRFSHPKLTVPTNSSYVLRSLRAAPSRFVCKSNGSDMTRQLELGKPEERRKPEKRVNGI FWIILINLGMFVADHIFQVRSIKSLYLYHNWPAWYQFVTATFCHASWEHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNAVSVG ASGAVFGLFAISVLVKITWDWRKILEVLILGQFVIEKVMEAAQASAAMTGPFRGGYPVQTVNHIAHLSGALVGVVLVWLVSRIPSPPDHEGQTSQGKSGK IR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.018G037300 [exp]	0	1
AT1G52870			Peroxisomal membrane 22 kDa (M...		Potri.011G123700 [exp]	3.46	0.9727
AT1G69935		SHW1	short hypocotyl in white light...		Potri.008G190900 [exp]	4.47	0.9709
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Potri.010G082300 [exp]	4.47	0.9692	ATCLH1.2
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	4.47	0.9676	NAP6.2
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	5.19	0.9697
AT5G63290			Radical SAM superfamily protei...		Potri.012G092900 [exp]	5.47	0.9556
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.003G103300 [exp]	6.48	0.9653
AT2G04360			unknown protein		Potri.014G169200 [exp]	8.83	0.9666
AT2G38660			Amino acid dehydrogenase famil...		Potri.006G114100 [exp]	11.09	0.9466
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	13.41	0.9605

Compare expression of checked genes

Potri.018G037300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.