Plant FIBer expression Database

Potri.018G037800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11500 340 / 4e-120 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G241900
[exp]
357 / 6e-127 AT5G11500 348 / 2e-123 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037899
[exp]
314 / 6e-110 AT5G11500 376 / 9e-135 unknown protein
Lus10038625
[exp]
287 / 9e-100 AT5G11500 351 / 4e-125 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0684 NFACT_RNA-bind PF05670 NFACT-R_1 NFACT protein RNA binding domain
Representative CDS sequence
>Potri.018G037800.1 pacid=42800657 polypeptide=Potri.018G037801.1.p locus=Potri.018G037800 ID=Potri.018G037800.1.v4.1 annot-version=v4.1
ATGGTGTTCTACTTCAAAGCCAGACCAGAGGCAGGAGATTACACTATTTTTATGGGTCTTGACAAGTACGAGAACGAGGAGCTTATCAAATATGGTTTCC
CTGAAGACATCTGGTTTCACGTGGACAAAATGTCTTCTGCCCATGTGTATGTAAGGCTGCATAAAGGTCAGACCATTGATGATATAAGTGAAGGTGTACT
TGAGGATTGTGTGCAGCTTGTTAAAGCAAATTCGATTCAAGGCAACAAGGTGAACAACATTGATGTTGTTTACACTCCTTGGGCCAATTTGAAGAAAACT
GCTTCCATGGATGTTGGTCAAGTTGGCTTCCACAATTCAAAGATGGTTCGAACTGTGAGAGTGGAGAAGCGGCTAAATGAGGTAGTTAATAGATTGAACA
AAACAAAGGTAGAAAGAAAACCTGATTTGAAAGCTGAGAGAGAAGCAGTCAATGCAGCAGAAAGAGCAGAGAGAAAGCTTCTTCTGAGAGATAAAAAACG
ACGTGAGGAAATGGAAAGGCTTGAAAAGGAGAGACAGACAGAGATAAGGAGCTACAAGGGTTTGATGGTGGCTGAAAAGATGACATCCAATAAACAAGTA
GCATCTGAAAACAAGTCCTTGCAGGAGCTGGAAGACGACTTTATGTAA
AA sequence
>Potri.018G037800.1 pacid=42800657 polypeptide=Potri.018G037801.1.p locus=Potri.018G037800 ID=Potri.018G037800.1.v4.1 annot-version=v4.1
MVFYFKARPEAGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDDISEGVLEDCVQLVKANSIQGNKVNNIDVVYTPWANLKKT
ASMDVGQVGFHNSKMVRTVRVEKRLNEVVNRLNKTKVERKPDLKAEREAVNAAERAERKLLLRDKKRREEMERLEKERQTEIRSYKGLMVAEKMTSNKQV
ASENKSLQELEDDFM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11500 unknown protein Potri.018G037800
[exp]
0 1
AT3G10940 LSF2 LIKE SEX4 2, dual specificity ... Potri.019G048600
[exp]
10.09 0.6842
AT5G46020 unknown protein Potri.011G060800
[exp]
16.24 0.6733
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Potri.001G374000
[exp]
22.13 0.6578 RAB11.4
AT1G02130 ARA5, AtRABD2a,... ARABIDOPSIS THALIANA RAB D2A, ... Potri.002G138400
[exp]
24.73 0.6513 RAB1.3
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Potri.006G126700
[exp]
26.94 0.6385
AT1G03250 unknown protein Potri.019G046400
[exp]
27.65 0.6213
AT3G06760 Drought-responsive family prot... Potri.011G057200
[exp]
31.22 0.6301
AT4G21105 cytochrome-c oxidases;electron... Potri.001G460200
[exp]
32.55 0.6471
AT2G36305 RCE1, ATFACE2, ... RAS-CONVERTING ENZYME 1, ARABI... Potri.006G083300
[exp]
37.04 0.5841
AT4G14240 CBS domain-containing protein ... Potri.010G030200
[exp]
37.41 0.5924

Potri.018G037800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.