Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32720 383 / 2e-130 ATLA1 La protein 1 (.1.2) AT1G79880 238 / 4e-74 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT2G43970 69 / 2e-12 RNA-binding protein (.1.2) AT5G46250 67 / 6e-12 RNA-binding protein (.1.2.3) AT3G19090 55 / 8e-08 RNA-binding protein (.1) AT5G21160 46 / 4e-05 LA RNA-binding protein (.1.2.3) AT4G35890 43 / 0.0005 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241800 [exp] 659 / 0 AT4G32720 403 / 3e-138 La protein 1 (.1.2) Potri.007G144800 [exp] 67 / 9e-12 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 67 / 1e-11 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.011G080700 [exp] 64 / 5e-11 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.009G106500 [exp] 53 / 3e-07 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.005G243600 [exp] 48 / 1e-05 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1) Potri.004G144700 [exp] 47 / 1e-05 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.005G109400 [exp] 47 / 2e-05 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1) Potri.001G220100 [exp] 43 / 0.0004 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022135 [exp] 379 / 3e-128 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10038624 [exp] 366 / 1e-122 AT4G32720 360 / 3e-121 La protein 1 (.1.2) Lus10011685 [exp] 364 / 7e-121 AT4G32720 382 / 1e-128 La protein 1 (.1.2) Lus10023315 [exp] 68 / 3e-12 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 68 / 4e-12 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10025608 [exp] 66 / 4e-11 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 65 / 8e-11 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10012058 [exp] 53 / 3e-07 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10041277 [exp] 47 / 5e-05 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05383 [poplar] [flax] La La domain CL0221 [poplar] [flax] RRM PF08777 [poplar] [flax] RRM_3 RNA binding motif
Representative CDS sequence Show only first row Show all	>Potri.018G037900.1 pacid=42800389 polypeptide=Potri.018G037900.1.p locus=Potri.018G037900 ID=Potri.018G037900.1.v4.1 annot-version=v4.1 ATGGCAACTCCTTCTTTGGACGAAGAAACCACCAAGGAAGTCCTTAGACAGGTTGAGTATTACTTCAGTGACAGCAACATCCCTCGTGATAATTTTTTGA GAAACATAATCGAGTCCAGTGAAGATGGCATGGTGAGTTTGGCTTTGATTTGTTCGTTTAAGAAGATGAAAGGTCACTTGAAGTTAATGGACGTGAAGCC TGAAGAAATCCCAGAAGTTACTGTTCAGGCTGTGGCAGAAACGTTGAGAAAATCCACTTCTCTTAAAGTTTCTGAAGATGGGAAGAAAGTAGGCAGGATT GCTGGGATATTGAAGCCGGATGAGGCTATAGAACAATTAGATGTAAGAACAATTGCTGCGTCTCCATTAAAATATAATGTGAAGCGAGAAGAGCTGGAGT CATTTTTTGGTCAACATGCGAAGGTTACAAGTGTAAGGATGCCTCGTCATGTCAGTGACAAAAGGGTATTTTGTGGTACTGCTTTGATTGAGTTCTCATT GGAGGAAGAGGCCGAAAATATTTTAAAGCAAAGCTTGGTTTTTGAAGGTGCAGAGCTAGAATTAAAACCAAAGAGAGAATTTGATACAGAAAGAGTGCAA GAAGAAGAGGAATTTGAAAATTCCCATCCCTCAACAGGCTCCAATAATAAGAATAGTTCCAATGGAGAGGCAAACTATCCAAAGGGCTTAATTATTGCAT TTGCTTTAAAGAATAAGTTAGCTGGAGGTTCCGCAGAACAAAATGGTGCTCAGGAACCTGCCAATGATGATGCAAATGCCTGTGATGGAGGATCGAATTC ATCAGAGAATATGACCAAAGAAAATGAACAGAAGGTGCCAGAAAACATCAAGACTGATGAAGAAAACAATGGGGAAGAGGTTGATGGGGACAATGGCTCT GAAAGTACAGTAATAAAAACTGAAGAGGAGAAATCATCTGAAGATCCCAATGAAAAGGAGGAAGTGAAGGAGAAACCTAACCCAGCTGCCTCCAAGGATG ACAAAAATGTTGTTTTGCGTGAAGATCTGAAGGCTGTCTTTGAAAGATTCGGCATTGTGAAGTATGTTGATTTCAAGATGGGAGATGAATCAGGATACAT TCGATTTGAAGAAGCAGAAGCAGCTCAGAAAGCTCGAGCAGCTGCAGTCCTAGCTAAAGAAGAAGGTCTGGTCGTGAAGAATTTTATAGCCACTTTAGAA CCTGTGACTGGTGAGGCAGAAAAGGAATACTGGAACCAATTCCGTGGACACAAAGAAAGGCGTTTTGAAAATAAGGGCAACCGAGGAAGGGGTGGGAGAT ACCACAAGGGTGGTGGCAAACATCCCCGCTCTAGAGAAAACGATTCTGGGAGACCAAATAAAGCTCAGAAAGTTGGAGCATCATGA
AA sequence Show only first row Show all	>Potri.018G037900.1 pacid=42800389 polypeptide=Potri.018G037900.1.p locus=Potri.018G037900 ID=Potri.018G037900.1.v4.1 annot-version=v4.1 MATPSLDEETTKEVLRQVEYYFSDSNIPRDNFLRNIIESSEDGMVSLALICSFKKMKGHLKLMDVKPEEIPEVTVQAVAETLRKSTSLKVSEDGKKVGRI AGILKPDEAIEQLDVRTIAASPLKYNVKREELESFFGQHAKVTSVRMPRHVSDKRVFCGTALIEFSLEEEAENILKQSLVFEGAELELKPKREFDTERVQ EEEEFENSHPSTGSNNKNSSNGEANYPKGLIIAFALKNKLAGGSAEQNGAQEPANDDANACDGGSNSSENMTKENEQKVPENIKTDEENNGEEVDGDNGS ESTVIKTEEEKSSEDPNEKEEVKEKPNPAASKDDKNVVLREDLKAVFERFGIVKYVDFKMGDESGYIRFEEAEAAQKARAAAVLAKEEGLVVKNFIATLE PVTGEAEKEYWNQFRGHKERRFENKGNRGRGGRYHKGGGKHPRSRENDSGRPNKAQKVGAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32720		ATLA1	La protein 1 (.1.2)		Potri.018G037900 [exp]	0	1
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Potri.016G043800 [exp]	2.23	0.7578	EIF3.3
AT5G10010			unknown protein		Potri.005G083700 [exp]	4.89	0.6875
AT4G34910			P-loop containing nucleoside t...		Potri.007G021800 [exp]	8.94	0.7468
AT3G10530			Transducin/WD40 repeat-like su...		Potri.010G232500 [exp]	13.85	0.6985
AT2G45730			eukaryotic initiation factor 3...		Potri.002G023300 [exp]	16.43	0.6706
AT2G40700			P-loop containing nucleoside t...		Potri.019G059100 [exp]	16.43	0.6687
AT1G23280			MAK16 protein-related (.1)		Potri.015G083700 [exp]	16.73	0.6673
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.001G417400 [exp]	27.92	0.6148
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.005G135500 [exp]	30.44	0.6601
AT3G02220			unknown protein		Potri.004G116800 [exp]	35.94	0.6201

Compare expression of checked genes

Potri.018G037900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.