Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12700 490 / 8e-166 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G12300 480 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 466 / 1e-157 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 464 / 5e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 458 / 8e-155 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 458 / 1e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 449 / 3e-151 RPF2 rna processing factor 2 (.1) AT1G62590 448 / 8e-151 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 446 / 6e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 445 / 7e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025600 [exp] 817 / 0 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G032100 [exp] 774 / 0 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G149800 [exp] 721 / 0 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 689 / 0 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 681 / 0 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 677 / 0 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 674 / 0 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 669 / 0 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 668 / 0 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029737 [exp] 505 / 5e-172 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008593 [exp] 496 / 3e-170 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 496 / 4e-170 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10042768 [exp] 497 / 6e-169 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 452 / 7e-153 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 452 / 8e-153 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 414 / 2e-138 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10024962 [exp] 397 / 3e-132 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014247 [exp] 366 / 1e-119 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003427 [exp] 335 / 3e-110 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.018G038300.1 pacid=42801614 polypeptide=Potri.018G038300.1.p locus=Potri.018G038300 ID=Potri.018G038300.1.v4.1 annot-version=v4.1 ATGATGGCGATGGCAATGAAGCGGCAAAGGGTTTTAATGGCTATTTCTTCTTCTTCTTCAGCTTCAATCCTTTTTGGACTTGCTTCTCAGAGAAGCCAAA CTGAAATGGGTATGGCTTTCTTTCTTCATACTTCCAGTGGTAGTGGTAGGCAAAAGTGCCAAAAGGGGTGTTCTTTTACTAATATTGAAGATGCCTTGTG TCGCTTCAATGACATGGTTCATATGCATCCCCTGCCTCGTATTGTCGATTTTAATGATTTTTTATCAGCTCTTGTCAGAATCAAACAATATGGGGCTGTG CTTTCTTTTTCCAAACAAATTGAATTGCTGCTGATCGAACGTAACGTATGTCATTTTAGCATATTGATTAATTGCTACTGTCGCTTGCAACGTGTCGATT TTGGGTTCTCTGTCTTTGGGAAGATCATTAAGCTTGGTTTTGAACCTAATGTTGTGGTTTTTTCTACTTTAATTAATGGCCTTTGTATCGAGGGGAAATT TGCTCGTGCTGTGGAATTTTTTGATGAGATGGTGGAAAGAGGATATCGACCTAATCTACATACTTATACGACGGTTATAAAAGGTTTGTGTAAGATTGGA AAGACCCCTGTCGCTGTTGAACTGCTAAAGAAAATGGACAATGAAGGTTGCCAACCAGATGTTGTGACATACATAACGATTATTGATAGCCTTTGCAAGG ATAGACTAGTGAAAGAGGCTTTCGATATCTTCTCTGCGATGAAGGGTAAAGGGATTCAACCAAATGTTGTCATTTACAATTCCTTAATGCATGGCCTATG CAACTCAGACCATCAGGAAGAGGCTCCAGCTTTTGTCAATGAAATGATGAGTTTGAACATCATGCCAGATGTCATTACCTTCAACATTTTGGTCGATACA CTTTGTAAAAAAGGCAAGATTTCAGAGGCTCAGGGAATAGTCAAGACAATGATTGAAAAGGGTGTGGAGCCTAATACCGTGACGTATAGTTCGTTGATGA ATGGATATCTTCTGCAAAACAGAGTTTCTGAAGCTAGAAAGGTATTTGATGCGATGATGACCAAGGGCTGCATACCTGATGCTTTTAGTTACAACGTCTT AATCAATGGATGTTGTAAGGCCCAGAGGATTGATGAGGCAAAACAACTTTTTGATGAAATAAGTTTTCGAGGCTTAATTCCAAATACTGCTAGTTACAAC ACTCTTATAAATGGCTTGTGTCAAGTAGGGAGAATTTTGGAAGCAAAATATCTTTTCAAGGATATGCATGCCCAGGGCTGCTCCCCAGATCTAATAACTT ACTCAATTTTGCTTGATGGCTTAAGCAAACAAGGTTACATTGATGAGGCATTGGAACTATTTCGAGAAATGCAAAATAGTTACTTGAAGCCTAATTTGGT GATCTATAATATCTTAATTGATGCCATGTGCAAATCTGGGAAGCTTGAAGAAGCAAGGGAGCTGTTTTCGGAACTCTACGTCAAAGGATTGCTGCCTAAT GTTCAGGTTTGGACTACAATAATCAGTGGACTTTGCAGAGAAGGATTGCTAGATGAAGCATGCACAGCTCTCAGACAAATGGAAAGGGATGGCTGCCCAC CAGATGGTTGGTGCTACAATGTTATTGTCCGAGGATTTCTCCGGAACAACGATGCATCAGGGGCAAAACAACTTTTGCAGGAAATGTTTGATAGAGGATT CTCTGCAGATGCCCACACCAGAACCTTGATGGGAGATCTGTTGTCTAATGATGTCATGGCAATCTTGGTTTGA
AA sequence Show only first row Show all	>Potri.018G038300.1 pacid=42801614 polypeptide=Potri.018G038300.1.p locus=Potri.018G038300 ID=Potri.018G038300.1.v4.1 annot-version=v4.1 MMAMAMKRQRVLMAISSSSSASILFGLASQRSQTEMGMAFFLHTSSGSGRQKCQKGCSFTNIEDALCRFNDMVHMHPLPRIVDFNDFLSALVRIKQYGAV LSFSKQIELLLIERNVCHFSILINCYCRLQRVDFGFSVFGKIIKLGFEPNVVVFSTLINGLCIEGKFARAVEFFDEMVERGYRPNLHTYTTVIKGLCKIG KTPVAVELLKKMDNEGCQPDVVTYITIIDSLCKDRLVKEAFDIFSAMKGKGIQPNVVIYNSLMHGLCNSDHQEEAPAFVNEMMSLNIMPDVITFNILVDT LCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVSEARKVFDAMMTKGCIPDAFSYNVLINGCCKAQRIDEAKQLFDEISFRGLIPNTASYN TLINGLCQVGRILEAKYLFKDMHAQGCSPDLITYSILLDGLSKQGYIDEALELFREMQNSYLKPNLVIYNILIDAMCKSGKLEEARELFSELYVKGLLPN VQVWTTIISGLCREGLLDEACTALRQMERDGCPPDGWCYNVIVRGFLRNNDASGAKQLLQEMFDRGFSADAHTRTLMGDLLSNDVMAILV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.018G038300 [exp]	0	1
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Potri.005G108900 [exp]	4.89	0.7600
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.015G117350 [exp]	10.58	0.7392
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G013200 [exp]	13.78	0.7146
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	14.28	0.7491
AT1G15780			unknown protein		Potri.003G025500 [exp]	19.44	0.7217
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Potri.012G075100 [exp]	19.49	0.6476	Pt-PI3.1
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.011G043100 [exp]	19.77	0.7164	Pt-ATMRP12.3
AT2G02880			mucin-related (.1)		Potri.012G021000 [exp]	27.34	0.6803
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	28.46	0.7212
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Potri.012G079600 [exp]	28.98	0.6842

Compare expression of checked genes

Potri.018G038300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.