Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20740 108 / 5e-29 Tetraspanin family protein (.1.2.3) AT2G20230 69 / 1e-13 Tetraspanin family protein (.1) AT4G28770 57 / 2e-09 Tetraspanin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241400 [exp] 309 / 2e-107 AT2G20740 108 / 1e-28 Tetraspanin family protein (.1.2.3) Potri.004G041500 [exp] 75 / 3e-16 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3) Potri.019G101800 [exp] 75 / 4e-16 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3) Potri.011G050900 [exp] 74 / 1e-15 AT2G20740 223 / 4e-74 Tetraspanin family protein (.1.2.3) Potri.013G134200 [exp] 64 / 2e-12 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3) Potri.002G253500 [exp] 61 / 7e-11 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039817 [exp] 99 / 5e-25 AT2G20740 266 / 3e-90 Tetraspanin family protein (.1.2.3) Lus10018584 [exp] 91 / 4e-22 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3) Lus10022841 [exp] 56 / 3e-09 AT2G20230 294 / 2e-100 Tetraspanin family protein (.1) Lus10011910 [exp] 52 / 7e-08 AT2G20230 281 / 2e-95 Tetraspanin family protein (.1) Lus10030939 [exp] 47 / 7e-06 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G038400.1 pacid=42800631 polypeptide=Potri.018G038400.1.p locus=Potri.018G038400 ID=Potri.018G038400.1.v4.1 annot-version=v4.1 ATGACAAGGTGTGCTAGGTGTTGCTTGCACAGCTCAATCAGGATAGTTAACCTGGTAATGCTCTTCTGTGGGATTGGAACGATCATATACTCCCTTTGGC TTCAAAAGAAATGGGATGAAAGTATTGCCAAGTTCCCTCTCGGGCCATCTCCTCTAATACCATGGTTTATATACACATTTTTAGGAGCGGGGATTATTGT CTGCTTAAGCGCCATCGGTGGTTATATTATAGCTAATTGCATCAGCAATTGTACCCTTTGCTTCTATATTGTTGCCATCTGCTGCCTTCTTTTCCTTGAA GTTGCCGTCGTCGTTGCAATTTTCTTCAAGATAGACTGGGGAAAGCAAATCACTACATATACTGGCCAGAAAAACACAGACTTTGAGATTCTTATGTCGA TCCACGTAAAGATAAGCCGCGCAATCATGCTCTTGATTATGGTAGCTCAGATCAGTGTTGTTATACTTGCTGCCATTCTTTTGGCAGGAGGTACAGAGCC AAGAACTCACTTTCAAGAGGTGGATACCCCGGTTTTTAGTCAATCCTTTTTAGTGCCAGCAGAGTCTCCAGGATCTGCAGAGGGCTCTACACAAGCTTGC AGAAGATGTGGGACTGTTTTATCTCCACGAGGAGAAAATGCACCGAGAGGCTTTTTTTCACGTATTAAGAGACTACTAAGAAGGAGATTCCAGAGAACAA ATACAGTTTATTAA
AA sequence Show only first row Show all	>Potri.018G038400.1 pacid=42800631 polypeptide=Potri.018G038400.1.p locus=Potri.018G038400 ID=Potri.018G038400.1.v4.1 annot-version=v4.1 MTRCARCCLHSSIRIVNLVMLFCGIGTIIYSLWLQKKWDESIAKFPLGPSPLIPWFIYTFLGAGIIVCLSAIGGYIIANCISNCTLCFYIVAICCLLFLE VAVVVAIFFKIDWGKQITTYTGQKNTDFEILMSIHVKISRAIMLLIMVAQISVVILAAILLAGGTEPRTHFQEVDTPVFSQSFLVPAESPGSAEGSTQAC RRCGTVLSPRGENAPRGFFSRIKRLLRRRFQRTNTVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20740			Tetraspanin family protein (.1...		Potri.018G038400 [exp]	0	1
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.005G099400 [exp]	1.00	0.9292
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.004G144300 [exp]	3.87	0.8788	SQN.2
AT3G63510			FMN-linked oxidoreductases sup...		Potri.009G059900 [exp]	5.47	0.8571
AT1G03670			ankyrin repeat family protein ...		Potri.018G077500 [exp]	6.70	0.8883
AT1G03670			ankyrin repeat family protein ...		Potri.018G078200 [exp]	7.48	0.8747
AT5G53060			RNA-binding KH domain-containi...		Potri.002G112200 [exp]	10.81	0.8397
AT1G16000			unknown protein		Potri.004G051201 [exp]	12.84	0.8624
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.001G290600 [exp]	12.84	0.8438
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.015G133100 [exp]	14.96	0.8800	AAT1.2,PtrCAT12
AT5G20670			Protein of unknown function (D...		Potri.012G042000 [exp]	16.73	0.8636

Compare expression of checked genes

Potri.018G038400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.