Plant FIBer expression Database

Potri.018G038500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25757 879 / 0 RNA polymerase I-associated factor PAF67 (.1)
AT5G25754 879 / 0 RNA polymerase I-associated factor PAF67 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G241300
[exp]
1021 / 0 AT5G25757 902 / 0.0 RNA polymerase I-associated factor PAF67 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038622
[exp]
973 / 0 AT5G25757 890 / 0.0 RNA polymerase I-associated factor PAF67 (.1)
Lus10037897
[exp]
966 / 0 AT5G25757 884 / 0.0 RNA polymerase I-associated factor PAF67 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF10255 Paf67 RNA polymerase I-associated factor PAF67
Representative CDS sequence
>Potri.018G038500.1 pacid=42801703 polypeptide=Potri.018G038500.1.p locus=Potri.018G038500 ID=Potri.018G038500.1.v4.1 annot-version=v4.1
ATGGCAACAACCTACGACTACGACGACGCTCCGACCAGACACGATGAACAAACCGGTCCAGACGGTTACGACCCAAACTTCGTCCCGGACTCCGTCAAGT
CCTTCGTAACACACTTGTACAGGCACATAAGAGAAAAAAACGTGTACGATATTTACGAGATGTACGAAACCTCTTTCCAAACACTTTCCGACCGTTTCTT
CAAAGACAGCCCTTGGCCTTCAGTAGATGCGGTTGCTAATTATGTCGACAATGATCATGTTTTTTGCTTGCTTTATCGTGAGATGTGGTTTAGGCATTTG
TATGCAAGACTTTCTCCTACGCTTAAGCAGCGGATTGATAGTTGGGATAATTATTGCAATCTTTTTCAGGTGGTGTTGCATGGAGTGGTGAATATGCAAT
TGCCGAATCAGTGGTTATGGGATATGGTGGATGAGTTTGTGTATCAGTTTCAGAGTTTTTGTCAGTATAGGGCTAAAATGAAGAACAAGACTGAGCAAGA
GATTGACCTTTTGAGGCAATTTGATCAGGCTTGGAATGTGTATGGAGTGCTGAACTTCTTGCAAGCACTGGTGGAGAAGTCGATGATCATTCAGATTCTA
GAGCGGGAGAAGGAAGGTCTTGAACAATTCACTGCTACTGATGGGTATGATTACAGTGGTGGAAGTAATGTCTTGAAGGTTTTGGGATATTTCAGCACAG
TTGGTTTGCTGCGAGTTCATTGCCTCTTGGGTGACTATCATACTGGCCTGAAGTGCTTACTTCCTATTGACATTAATCAACATGGTGTCTATGCCACTGT
TATTGGAAGCCATATCAGTACAATATACCATTATGGTTTTGCCAATCTTATGTTGAGGAGGTATGTGGATGCTATTCGCGAATTCAATAAAATTCTCCTG
TACATATACAAGACTAAGCAGTATCATCAGAAATCTTCACAATATGAGCAGATACTAAAGAAGAATGAACAGATGTATGCTTTGCTGGCAATTTGTCTGT
CTCTTTGCCCACAAGTGAAGCTTATTGACGAGACAGTCAACGCACAATTAAGGGAGAAGTATGGTGAAAAGATGGCTAGAATGCAAAGATGTGACGGCGA
GGCATTTGCTATCTATGATGAGCTCTTCTCATATGCATGCCCTAAGTTCATTACTCCCTCAGCTCCAAGTTTTGAAGAGCCTCTTGTAAACTACAACCAG
GATGCTTACAGACTGCAACTGAAGTTGTTTCTTTACGAAGTAAAACAGCAACAATTGTTGTCAGGTGTTAGAACCTTCCTGAAAGTGTATTCTGCTATAT
CCGTTGGGAAGCTTGCTAATTACATGGAAGTTGATGAACCAACTCTAAGGACTATCCTGATGACATACAAGCACAAGACTCATGCTGTTGATTCTGAGGG
GAAGATTATATCGAATGCTGATGTGGATTTCTACATTGATGATGACATGATTCACGTTGTTGACACCAAACCGGTGAGGCGATATGGTGATTACTTTTTG
CGGCAAATTGTCAAGCTTGAAGGGGTGATAAATGATTTGGATAGGATAAAGCTGGAATGA
AA sequence
>Potri.018G038500.1 pacid=42801703 polypeptide=Potri.018G038500.1.p locus=Potri.018G038500 ID=Potri.018G038500.1.v4.1 annot-version=v4.1
MATTYDYDDAPTRHDEQTGPDGYDPNFVPDSVKSFVTHLYRHIREKNVYDIYEMYETSFQTLSDRFFKDSPWPSVDAVANYVDNDHVFCLLYREMWFRHL
YARLSPTLKQRIDSWDNYCNLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIDLLRQFDQAWNVYGVLNFLQALVEKSMIIQIL
EREKEGLEQFTATDGYDYSGGSNVLKVLGYFSTVGLLRVHCLLGDYHTGLKCLLPIDINQHGVYATVIGSHISTIYHYGFANLMLRRYVDAIREFNKILL
YIYKTKQYHQKSSQYEQILKKNEQMYALLAICLSLCPQVKLIDETVNAQLREKYGEKMARMQRCDGEAFAIYDELFSYACPKFITPSAPSFEEPLVNYNQ
DAYRLQLKLFLYEVKQQQLLSGVRTFLKVYSAISVGKLANYMEVDEPTLRTILMTYKHKTHAVDSEGKIISNADVDFYIDDDMIHVVDTKPVRRYGDYFL
RQIVKLEGVINDLDRIKLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G25757 RNA polymerase I-associated fa... Potri.018G038500
[exp]
0 1
AT3G27080 TOM20-3 translocase of outer membrane ... Potri.003G173400
[exp]
4.24 0.9405 Pt-TOM20.2
AT5G60390 GTP binding Elongation factor ... Potri.008G042700
[exp]
7.21 0.9296 Pt-ADR12.2
AT3G49010 RSU2, ATBBC1 40S RIBOSOMAL PROTEIN, breast ... Potri.016G082300
[exp]
14.69 0.9219
AT1G57720 Translation elongation factor ... Potri.003G004700
[exp]
15.00 0.9165
Potri.002G066300
[exp]
15.09 0.8827
AT3G11830 TCP-1/cpn60 chaperonin family ... Potri.009G157400
[exp]
16.00 0.8968
Potri.009G025001
[exp]
16.58 0.8830
AT2G35290 unknown protein Potri.001G142700
[exp]
17.66 0.9047
AT2G20420 ATP citrate lyase (ACL) family... Potri.002G259600
[exp]
17.88 0.9127
AT1G62440 LRX2 leucine-rich repeat/extensin 2... Potri.006G081200
[exp]
19.49 0.9063

Potri.018G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.