Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57850 473 / 2e-167 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT3G05190 93 / 2e-20 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT5G27410 91 / 1e-19 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G115000 [exp] 376 / 8e-130 AT5G57850 365 / 1e-125 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.005G039100 [exp] 93 / 2e-20 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011382 [exp] 551 / 0 AT5G57850 476 / 2e-168 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Lus10006441 [exp] 548 / 0 AT5G57850 474 / 6e-168 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Lus10013676 [exp] 374 / 1e-123 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10035342 [exp] 79 / 2e-15 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [poplar] [flax] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Potri.018G039000.1 pacid=42801024 polypeptide=Potri.018G039000.1.p locus=Potri.018G039000 ID=Potri.018G039000.1.v4.1 annot-version=v4.1 ATGGCTTCTCTTTCAACTTCTCTGCCAAAACCCAGTTTTCAACACCCAAATACTAGCATAAATCTGCCTGATCACTTGCATAATTCGTGTCTTGTACCGA GAAATCTTTCATTTCAAAGACTTGGGTTGATTTCACAACAGGGGTTGTTTGGGAAAGTGAAGATTGCTAGATGCTCTCATCAAGCTGAAGCTTTGGTTGA TTCTAATACTCAAATCTCTGATGTTCCAATCCTAACCTGCTCAGAGGCTTTTGAAAGGCTAAAGAAAAACCGAGAAAATCAGAAAGGAAAGCAGCAATTC TTGGCCATGTACTCTAGCATTTTTGGAGGAATAACAACAGATACATCAGCTATGGTGATACCTTTGGATGACCACATGGTCCACAGGGGACATGGTGTCT TTGATACTGCTGCAATAGTAGATGGGCACTTATATGAATTCGACCAACACCTTGATCGTATATTAAGGTCAGCATCCTTGGCCAAAATTAATCTCCCTTT TGATAGGGAAAATATAAGGAGAATTCTCATACAAACAGTGAGTGCTTCAAAGTGCAAGACAGGATCACTAAGATACTGGCTCTCGGCAGGACCTGGTGAT TTCCAACTATCTCCGTCTGACTGCCATCAGCCAGCTCTTTATGCCATTGTAATCCAAGATAAGTCTCCACATGATTCAAGAGGCATCAAGGTAGTAACTT CATCAGTCCCAATAAAACCCCCGCAATTTGCCACCGTGAAAAGTGTAAATTACCTTCCCAATGCACTTTCAAAGATGGAAGCAGAAGAGAATGATGCATA TGCATCTATTTGGCTGGATAATGATGGATTCGTTGCTGAAGGGCCCAGCATGAATGTGGCATTTGTTACCAAGGAAAAAGACCTTCTGATGCCCGCCTTT GACAAAATTTTGAGTGGGTGCACGGCTAAGAGAGTTTTGACACTAGCAGAGGGACTGGTAAAGGAGGGTAAACTCCATGGAATAAAGATTGATGATGTGA CTGTAGAGGAAGGAAAGAAAGCAGATGAGATGATGCTTATTGGCAGTGGAGTACTTGTTCGCCCTGCGGTGCAGTGGGACAATCAGGTCATTGGTGATGG CAAAGAAGGACCCATAACTCGGGCTCTCTTGGCTCTTATACTAGAGGACATGAAATCAGGCCCCCCTGCAGTCCGAGTGCCGGTCCCTTGA
AA sequence Show only first row Show all	>Potri.018G039000.1 pacid=42801024 polypeptide=Potri.018G039000.1.p locus=Potri.018G039000 ID=Potri.018G039000.1.v4.1 annot-version=v4.1 MASLSTSLPKPSFQHPNTSINLPDHLHNSCLVPRNLSFQRLGLISQQGLFGKVKIARCSHQAEALVDSNTQISDVPILTCSEAFERLKKNRENQKGKQQF LAMYSSIFGGITTDTSAMVIPLDDHMVHRGHGVFDTAAIVDGHLYEFDQHLDRILRSASLAKINLPFDRENIRRILIQTVSASKCKTGSLRYWLSAGPGD FQLSPSDCHQPALYAIVIQDKSPHDSRGIKVVTSSVPIKPPQFATVKSVNYLPNALSKMEAEENDAYASIWLDNDGFVAEGPSMNVAFVTKEKDLLMPAF DKILSGCTAKRVLTLAEGLVKEGKLHGIKIDDVTVEEGKKADEMMLIGSGVLVRPAVQWDNQVIGDGKEGPITRALLALILEDMKSGPPAVRVPVP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57850			D-aminoacid aminotransferase-l...		Potri.018G039000 [exp]	0	1
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154600 [exp]	1.41	0.8615
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.011G104900 [exp]	2.23	0.8354	Pt-PSCLRR52.52
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175701 [exp]	4.35	0.8701
AT3G14470			NB-ARC domain-containing disea...		Potri.017G140132 [exp]	5.29	0.8510
AT1G53430			Leucine-rich repeat transmembr...		Potri.001G385750 [exp]	5.91	0.8317
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.015G013100 [exp]	6.92	0.8614
AT1G50180			NB-ARC domain-containing disea...		Potri.018G138500 [exp]	7.48	0.7768
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	9.16	0.8327
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125301 [exp]	10.39	0.8256
AT1G14780			MAC/Perforin domain-containing...		Potri.010G104600 [exp]	11.48	0.8203

Compare expression of checked genes

Potri.018G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.