Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32760 561 / 0 ENTH/VHS/GAT family protein (.1.2) AT3G08790 483 / 1e-163 ENTH/VHS/GAT family protein (.1) AT1G21380 280 / 1e-86 Target of Myb protein 1 (.1) AT1G76970 275 / 2e-85 Target of Myb protein 1 (.1) AT5G01760 221 / 5e-64 ENTH/VHS/GAT family protein (.1) AT5G63640 185 / 2e-51 ENTH/VHS/GAT family protein (.1) AT2G38410 145 / 2e-36 ENTH/VHS/GAT family protein (.1) AT5G16880 102 / 3e-23 Target of Myb protein 1 (.1.2.3) AT1G06210 66 / 1e-11 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241000 [exp] 987 / 0 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 306 / 3e-96 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 302 / 8e-95 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.016G131900 [exp] 263 / 4e-78 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 251 / 6e-74 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 189 / 3e-53 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 189 / 3e-53 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 174 / 4e-48 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.019G050000 [exp] 107 / 6e-25 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022140 [exp] 637 / 0 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10011689 [exp] 465 / 1e-155 AT3G08790 461 / 5e-154 ENTH/VHS/GAT family protein (.1) Lus10029739 [exp] 282 / 4e-87 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10018948 [exp] 278 / 1e-86 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10028649 [exp] 284 / 3e-85 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10042770 [exp] 277 / 3e-85 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10014155 [exp] 248 / 4e-73 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 248 / 1e-72 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 247 / 2e-72 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10022667 [exp] 183 / 5e-51 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [poplar] [flax] GAT GAT domain
Representative CDS sequence Show only first row Show all	>Potri.018G039100.1 pacid=42801575 polypeptide=Potri.018G039100.1.p locus=Potri.018G039100 ID=Potri.018G039100.1.v4.1 annot-version=v4.1 ATGGTGAATGCTATGGTGGAAAGAGCCACGAGCGACATGCTGATCGGGCCTGATTGGGCTATGAATATCGAGATCTGTGATATATGCAATCGCGACCCTT CGCAAGCGAAGGATGTTGTCAAGGGAATAAAGAAGAAACTTGGTAGTAGGAATTCAAAAGTTCAGCTACTTTCCCTAACACTGTTAGAAACGATTATAAA GAACTGTGGGGACATTGTACATATGCATGTGGCAGAGAAAGATCTTCTTCATGAGATGGTCAGAATAGCTAAGAAAAAGCCTGACCTTCATGTCAAAGAG AAGATATTGGTTCTGGTCGATACTTGGCAAGAAGCTTTTGGTGGTGCAAGGGCAAGATATCCGCAATATTATGCTGCATACCAAGAGTTGTTGCGTGCTG GGGCAGTATTCCCTCCCAGGTCTGAGAGGTCCACACCTCTATTCACACCTCCACAAACACAGCCTTTGTCATCGTATCCTCAAAATCTGCGCAATATTGA GTATCCACAAGGAGCAGCTGAATCTCCAGCAGAGTCAGAGTTCCCAACCTTGAGCTTGACAGAAATTCAAAATGCTCGGGGTATAATGGATGTTCTATCA GAGATGCTAAATGCATTAGATCCAAGGAACAAAGAGGGGATTAGGCAGGAGGTTATTGTTGACCTAGTGGATCAATGCCGTACATACAAGCAAAGAGTGG TACATCTTGTTAATTCAACCACGGATGAATCACTACTGTGTCAAGGATTAGCATTGAATGATGACTTGCAGCGAGTACTTGCCAGGCACGAATCCATTTC TTCAGGAACTCCTGTTCCAGTCCAGGATGAAAAACTGAAAGCTGAATCTAGTGGAGCACTTGTAGATATTGGTGCTCCTCTAGTTGATACTGGAGATAAT AAGGGCAAACAGCCTGATGGGGGATCAACCTCAAATTCTAGTGCAGGGGCTCAAACACTAAACCAGTTGTTGCTCCCTGCACCTCCTGCAACTAATGCTC CAACTACTCCGGCAGCAGCCAATACCAAAGTGGACCTGTTGAGTGGTGATGATTATAACTCACCAAAGGCCGAGACTTCTCTGGCTCTTGTTCCTGTTGG AGAAGCACAGGCAACCACACCTCTGTCACAGCAGAATGCACTTGTTCTTTTTGACATGTTTTCTGATGGTAACAATGCTCCAAATGCAGTCAATATGCAG GCTACCAATCTTGCTGGACCAACCAATTCTTTGACTCCACAATTCCAACAGCAACAGAATTTTCAAACACCAGATGCTGGTGTTTACAGGAATGGAAATG CCCCTAATATGGGATCACCACGATATCAGCAGTCAGTATACATGCAAGCCTCTGGTCCTGCATGGAATGGACATCTTCCCCAGCAGCAACAGCAGCCGGC CTCACCTGTTTATGGTGCTCAAAATGGTGGATCACTGCCTCCACCTCCTTGGGAAGCTCAGCCAGCAGACGCAAGCCCAGTGACAGGCGCTCAATACCCT CAATCAATGCAAGTTACTCAGATGGCTGTCACGCATTCACAACCACTGCCTAGTGGTATGCACCCTCAAGGGCCTCAACCAGGGGGTAATGAACAGGTGG GTATGTACATGCAGCCAATCACAACCGGCCATTTGCCTGCAGTTAATAATCACAGTGCACCAAGCAATCAGTTTTTAGGCATGAATCCTCATGCAATGCA GGGAGGGCAGTATATGGGTATGTATCCACAACCAATGCAAGCTGGGCCGATGGCCTCTATGTATCCTCAACAAATGTACGGCAACCAAATGGCTGGATAT GGGTATGGTTTGCAGCAAGGGACGCAGTACCTTGAACAGCGAATGAATGGAGTATCTGTTAGAGATGACAATGGCCTGAGAAACTCATCTTACCAGGTCT CAACAACTCCTTATGTGCCGTCTGGTAAGCCTTCCAAGCCAGAGGATAAGCTATTTGGAGACCTAGTAGATATTTCAAAATTCAAGCCAGGAAAATCCAC TCCTGGGAGAGCTGGTGGCTTGTGA
AA sequence Show only first row Show all	>Potri.018G039100.1 pacid=42801575 polypeptide=Potri.018G039100.1.p locus=Potri.018G039100 ID=Potri.018G039100.1.v4.1 annot-version=v4.1 MVNAMVERATSDMLIGPDWAMNIEICDICNRDPSQAKDVVKGIKKKLGSRNSKVQLLSLTLLETIIKNCGDIVHMHVAEKDLLHEMVRIAKKKPDLHVKE KILVLVDTWQEAFGGARARYPQYYAAYQELLRAGAVFPPRSERSTPLFTPPQTQPLSSYPQNLRNIEYPQGAAESPAESEFPTLSLTEIQNARGIMDVLS EMLNALDPRNKEGIRQEVIVDLVDQCRTYKQRVVHLVNSTTDESLLCQGLALNDDLQRVLARHESISSGTPVPVQDEKLKAESSGALVDIGAPLVDTGDN KGKQPDGGSTSNSSAGAQTLNQLLLPAPPATNAPTTPAAANTKVDLLSGDDYNSPKAETSLALVPVGEAQATTPLSQQNALVLFDMFSDGNNAPNAVNMQ ATNLAGPTNSLTPQFQQQQNFQTPDAGVYRNGNAPNMGSPRYQQSVYMQASGPAWNGHLPQQQQQPASPVYGAQNGGSLPPPPWEAQPADASPVTGAQYP QSMQVTQMAVTHSQPLPSGMHPQGPQPGGNEQVGMYMQPITTGHLPAVNNHSAPSNQFLGMNPHAMQGGQYMGMYPQPMQAGPMASMYPQQMYGNQMAGY GYGLQQGTQYLEQRMNGVSVRDDNGLRNSSYQVSTTPYVPSGKPSKPEDKLFGDLVDISKFKPGKSTPGRAGGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.018G039100 [exp]	0	1
AT3G15470			Transducin/WD40 repeat-like su...		Potri.011G122500 [exp]	2.00	0.7785
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.014G197600 [exp]	4.24	0.7765
AT1G07990			SIT4 phosphatase-associated fa...		Potri.009G014700 [exp]	5.91	0.7368
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.016G123800 [exp]	6.00	0.7178
AT3G43610			Spc97 / Spc98 family of spindl...		Potri.009G153300 [exp]	6.70	0.7726
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	9.79	0.7430
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.017G054000 [exp]	11.40	0.7249
AT4G19900			alpha 1,4-glycosyltransferase ...		Potri.015G122200 [exp]	12.00	0.7313
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.004G159300 [exp]	17.29	0.7145
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	19.44	0.7155

Compare expression of checked genes

Potri.018G039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.