Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11530 187 / 9e-48 EMF1 embryonic flower 1 (EMF1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240500 [exp] 2095 / 0 AT5G11530 281 / 5e-78 embryonic flower 1 (EMF1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009490 [exp] 452 / 4e-137 AT5G11530 63 / 1e-09 embryonic flower 1 (EMF1) (.1) Lus10011692 [exp] 434 / 2e-130 AT5G11530 64 / 5e-10 embryonic flower 1 (EMF1) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G039500.2 pacid=42800789 polypeptide=Potri.018G039500.2.p locus=Potri.018G039500 ID=Potri.018G039500.2.v4.1 annot-version=v4.1 ATGGAAAGTACTGTCTTAGTGGAGAAGAATCATCCTTGTAGCCATTCAAAACTTGTATCCAAGGTGGAATCATCTATTAGGATTGATTCCATAACCATCG ACCTGGACAATGTTGATGAGAAAATTGAGGCAGAAAAATGCTCACACTTTTCTATGCGTGGATATGTATCTGAGATTCGTAAACGAGACTGGAAGATGTG TTGGCCGTTTGTGTCAGATGGTGACAGTAATAACTATGAGGAGCAAGCATGTCTGCTTCCTCCTTTACATGTTCCGAAATTCCGATTTTGGCGTTGTCAG AATTGTGTGTGGGAAGTTGGTGCCAAAGGCACTGCAAACTGTTATGGAACTGCTCTAAAATCATGCGGAGCTGAACTCAAATCCACCAACGTTTGTTCCC ATGGACCAAACTTTGATGATGCTGCAAGACTACCATCTGATGTTCAGGAAGCCACAAATCAAGAAATTCCTGAGGGAAGACAAGCTGATGTTTTTGCTAG TTTGAACAGTACCAGTAAATCTCATCATTCACTGTCCATTGATAAAAATGAAAAGAAGACTAAGGATATGAATGGTTCCATCATAGGGAAACATATGGGG TCAGAAGATAATTTGAAGCAGGAAAATCATAGACTGGCATGCGTAGTAACTGAAGTTGTTTCAAGCCCAATTCAGAAGGCAGATCATTCAGATGAAATAG TAGCTTTCAAGTCAATAGGTATTGACTTATGTGAGTCAGGCTGTGGACATCATGAAGTTGCTGATGCTGAGTTTTCTAAAAACCTTAATTGCATGGTAAA TAATGCTACTGGACTTTGTGAAGCAGGAAAAGAAACTTCCATAGATGATCAACACAAAGAGCTAATAGCTTGTGGTATATCTGGAGAAGTTGGTAACATT GATGATGGGGCACTCAGTACTGCCAACAAGGATCCTGTGAGCCGCCCTTCCCTGGAATTAGATGAGTATGATGATCCTTCATCTGAAAGTGCTGAGATCA TGGTTGGTCATAATACTCAGGATGTTCTTCATGAAAATTCAAGTGGTTTGCATCGTAGAAAAACTCGAAAGGTACGCTTGTTGACGGAATTGTTGTGTGA AAATGGGGATAGAGACACTGATAACAGAACTCGGTTTTCTCTGCCCCATGCCTTTCCTGATGCATCTGCTGGAGTTGATAAGATTTCTGTTCTCCAAGGG GAGGTGGCTATCCAAGGCAAAGTTAGAAGGGGCTTGGGTCATAATAGTAAAAGAAAGTTGCCTCAGGATGAAGATTCAAGATCTCTGGAGATGAGGTCTC CCAATAAAGTTTGCAAAGAAGCTGGGATCTTAAAGAGAGATGGGGAATCTGCTGAACCCATTGTGGCTTCTGAATCAGAAGAAGATGCATCTGGTAGAAT GGGTTTACAAACTGGCATGAAGATTCACTGGGCCAAAAACAAAGTTGATAGAAGTCCCATTGTAAGTAAGAAGAAAAACAAAAAGGTACCAAGTTTTGAT GAATGTTTGTCTCCAGACCCATCCCAAGAAAATTTGCCAAATGAAATTGGGGAGAAAAATGGAGATAATTCTAGGCCCATTGCTGTTGATGGTGTACTGG CCAAGTCAGTACACAATGCATTTATAGGCAGAGAGATGGACCTTTTCCCTTTGCCTGATCCAAGAATGGAGAAAAATGTTAGTGAGTATAAGAAGAAAGG AAAGATGCCTCAGTTTGATGATTATCAGGTTTCCCCTACTCCTTGGAATCATGACATTCTCAGAGAAGGTCCAGTGATTAGAAAAGATGTGGGGACAATA AATACTGGACCTGTAGTTTTTCCATTTCATTCAGCACAGGAAACATCCCTTGAAAAGGGGCTGGATCTTTCTCTTAACAGCTACAAGACTGCACAAAGCT ATGATGGGAAACATATTCCACTGGTAGAAAATAGGCGAAGTTGTTTATTTACTTGGCAAGAAGGAACTTCCCAAATTCAGGCCAAGAGGAAAGCTTCAAA AATTGAGCACGCGGGGAATATCAGTTTCACTTCTAAAATTGCCCAAGATGCACCTTTTGAGAAAGGACTACATTGTGATCCCAATACCAAGAGACCATCT TTTGAAATGCCCTTCCGCAGAGAGAAGCAGAAATACACCTCCCAGGTTGAAATTGGGGGTTGCTCTCTCATGCAGAAAAAGGACTTTTGTCACAATAAAG GCAATGAGGGAACCATTGGAATACTGGAGCATTCAGCTTTTCCAAGGAAAGATGTCAACCAAAGAGCAGACAAGGTGTGTGAACAGGGAGCTTTAGATGA CATTCCAATGGAAATTGTAGAACTCATGGCAAAGAATCAGTATGAGAGGTGTCTTCCTGATGGTGAATACGAGAAATGCCAGTTAGAAACAACTAGTAGT TCAAGGAGGAGTCAGACAATAAATTTCAGTCAATTATTGGGGCTTGGAGGATTAAGCTTATTTCATCAGGAAACTACTCGGAAACAGAACCCTCCAGCTA GAAGAAATGACATAATAAAGATTGGTGAAATGGTAGGACAAACTAAACAAAAGGAAGTGGATTTCTTTTCTCAAGCTGATCGAAACCCATTCAGCATGAG GCAACCGGAAAAAATTCGTTCCCCTGTAGGGTTTGGGGCATTTCTACAACTTCAAGAGAAGCCATCAGGCAGATTCCAACATCCTGCTTCCAGTTATAAC ATACAAAACACTCCTCAAATTTGCAAACAGAGAGGGGAAGTGGTGGGGAATAGGTCTTGTCATACCAGGTTCCAGACCCCAGGAGCATGTAACACATGCC AGAGCATTCCGCAGCAAAGTAAGGAAGCAAATCAACTTTGGTCATCAATGATGCCAAATCGCATGCCCTTTGTATATAGCATTCCTCCTAAGTGTGTGAC TCCATCTACCAATGTTGATGTGTTTCCTCATTCTCCTGGCACTGTGCTCAAGGAAAATATGAATGGGGATCGTGTTCTTAAGTTTCCAAACAAGAATGCT GCCAACCTTGGAAAACAAAACAGGAATCTTGGTTCAGAAACGCTCCTCAGGGCACATGCAGAATACCCTTTTGCTGGAAAACATAATGGGATTGAGCTTA ATCATAAGCCAATGGGGTCCTTGGAACTGTATTCTAATGAAACAATACCAGCTATGCACTTACTCAGCCTCATGGACGCAGGAGTGCAGTCCAGTGCACC GATCAATATGGATGTAAACCCAAAGTTCCTCAAGAGACCTGCCATTATTCACAATGCTGAACCAAAGGAGTTTTCTAGGCTGGACACTGGGGCATATAAA GTCATTTCTTCTGTGAAGCACCCACCACGTAATCATAATGGTAAAAATCAACTTGCAGAGAGTTCCCGTGACCTTATTCCTATCATGCAAACAACAGCTG GTGCATCTTCTTTGTCAATTCGACATGATAAACGTATTAGGAAGCCTGTTGATCTTCCCAGTCCAGTTATTCAATATAAAGAGAGGAGAAAAGGCTCTGA TTCACGCACACAGAATAAAGCAAATAGGTCACAGACATCAGCAAATGGTGGTTTTGGCACCAACTGTGGATCCATTCCAGCTCATAGCATGCGGATAATG TCTTTTGGTGCTCCAGATCCTTCAGTGTTTTCATTGCCATTCCGTGCATTGGAAAACCCAAACAAGGACAAGTTGAAGTCCCTTGATAACAATAGAATTG TTCACCCCCACAAAAGCAGCTCTGAGACTGAAGTCTGCAGTGTGAACAGAAACCCTGCTGATTTCACCATACCGGAAGCTGGAAATATGTATATGATTGC AGGTGAAGCCCTTCGATTTGAAAAGGATGTTCCTTTTGCAAATGGATCTCACTCGCTTAAATTGGATGGGCGCAAACGACAGAGGAAGCTTCCTGCTATG AAAGACCATGGACGACCTCCAATGTCATGA
AA sequence Show only first row Show all	>Potri.018G039500.2 pacid=42800789 polypeptide=Potri.018G039500.2.p locus=Potri.018G039500 ID=Potri.018G039500.2.v4.1 annot-version=v4.1 MESTVLVEKNHPCSHSKLVSKVESSIRIDSITIDLDNVDEKIEAEKCSHFSMRGYVSEIRKRDWKMCWPFVSDGDSNNYEEQACLLPPLHVPKFRFWRCQ NCVWEVGAKGTANCYGTALKSCGAELKSTNVCSHGPNFDDAARLPSDVQEATNQEIPEGRQADVFASLNSTSKSHHSLSIDKNEKKTKDMNGSIIGKHMG SEDNLKQENHRLACVVTEVVSSPIQKADHSDEIVAFKSIGIDLCESGCGHHEVADAEFSKNLNCMVNNATGLCEAGKETSIDDQHKELIACGISGEVGNI DDGALSTANKDPVSRPSLELDEYDDPSSESAEIMVGHNTQDVLHENSSGLHRRKTRKVRLLTELLCENGDRDTDNRTRFSLPHAFPDASAGVDKISVLQG EVAIQGKVRRGLGHNSKRKLPQDEDSRSLEMRSPNKVCKEAGILKRDGESAEPIVASESEEDASGRMGLQTGMKIHWAKNKVDRSPIVSKKKNKKVPSFD ECLSPDPSQENLPNEIGEKNGDNSRPIAVDGVLAKSVHNAFIGREMDLFPLPDPRMEKNVSEYKKKGKMPQFDDYQVSPTPWNHDILREGPVIRKDVGTI NTGPVVFPFHSAQETSLEKGLDLSLNSYKTAQSYDGKHIPLVENRRSCLFTWQEGTSQIQAKRKASKIEHAGNISFTSKIAQDAPFEKGLHCDPNTKRPS FEMPFRREKQKYTSQVEIGGCSLMQKKDFCHNKGNEGTIGILEHSAFPRKDVNQRADKVCEQGALDDIPMEIVELMAKNQYERCLPDGEYEKCQLETTSS SRRSQTINFSQLLGLGGLSLFHQETTRKQNPPARRNDIIKIGEMVGQTKQKEVDFFSQADRNPFSMRQPEKIRSPVGFGAFLQLQEKPSGRFQHPASSYN IQNTPQICKQRGEVVGNRSCHTRFQTPGACNTCQSIPQQSKEANQLWSSMMPNRMPFVYSIPPKCVTPSTNVDVFPHSPGTVLKENMNGDRVLKFPNKNA ANLGKQNRNLGSETLLRAHAEYPFAGKHNGIELNHKPMGSLELYSNETIPAMHLLSLMDAGVQSSAPINMDVNPKFLKRPAIIHNAEPKEFSRLDTGAYK VISSVKHPPRNHNGKNQLAESSRDLIPIMQTTAGASSLSIRHDKRIRKPVDLPSPVIQYKERRKGSDSRTQNKANRSQTSANGGFGTNCGSIPAHSMRIM SFGAPDPSVFSLPFRALENPNKDKLKSLDNNRIVHPHKSSSETEVCSVNRNPADFTIPEAGNMYMIAGEALRFEKDVPFANGSHSLKLDGRKRQRKLPAM KDHGRPPMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Potri.018G039500 [exp]	0	1
AT1G34320			Protein of unknown function (D...		Potri.019G085900 [exp]	3.16	0.8539
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	3.60	0.8860
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.016G025300 [exp]	4.24	0.8576
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	6.70	0.8634
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.007G092200 [exp]	10.24	0.8383
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Potri.001G031400 [exp]	13.96	0.8184	Pt-RBR1.1
AT5G58003		CPL4	C-terminal domain phosphatase-...		Potri.018G108300 [exp]	20.49	0.8250
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	21.00	0.8540	TTN8.2
AT5G35560			DENN (AEX-3) domain-containing...		Potri.006G143000 [exp]	21.02	0.8362
AT1G27595			unknown protein		Potri.002G107400 [exp]	21.93	0.8431

Compare expression of checked genes

Potri.018G039500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.